Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QYN12_RS15290 Genome accession   NZ_CP129272
Coordinates   3095079..3095708 (-) Length   209 a.a.
NCBI ID   WP_000699018.1    Uniprot ID   -
Organism   Escherichia coli strain G12     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3090079..3100708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYN12_RS15275 (QYN12_15275) helD 3090321..3092375 (-) 2055 WP_001317751.1 DNA helicase IV -
  QYN12_RS15280 (QYN12_15280) yccF 3092498..3092944 (+) 447 WP_001261236.1 YccF domain-containing protein -
  QYN12_RS15285 (QYN12_15285) yccS 3092954..3095116 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QYN12_RS15290 (QYN12_15290) sxy/tfoX 3095079..3095708 (-) 630 WP_000699018.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QYN12_RS15295 (QYN12_15295) sulA 3095927..3096436 (+) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  QYN12_RS15300 (QYN12_15300) ompA 3096793..3097833 (+) 1041 WP_001314606.1 porin OmpA -
  QYN12_RS15305 (QYN12_15305) matP 3097909..3098361 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QYN12_RS15310 (QYN12_15310) ycbZ 3098547..3100307 (+) 1761 WP_000156476.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24173.10 Da        Isoelectric Point: 9.2180

>NTDB_id=778017 QYN12_RS15290 WP_000699018.1 3095079..3095708(-) (sxy/tfoX) [Escherichia coli strain G12]
MKILSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=778017 QYN12_RS15290 WP_000699018.1 3095079..3095708(-) (sxy/tfoX) [Escherichia coli strain G12]
ATGAAAATCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCTGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995