Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MWM16_RS02425 Genome accession   NZ_AP025617
Coordinates   417739..418206 (+) Length   155 a.a.
NCBI ID   WP_011173597.1    Uniprot ID   Q72IE6
Organism   Thermus thermophilus strain SNM7-6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 412739..423206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM16_RS02400 (TthSNM76_04680) rnhA 414355..414855 (-) 501 WP_143591510.1 ribonuclease HI -
  MWM16_RS02405 (TthSNM76_04690) - 414852..415238 (-) 387 WP_244340765.1 VOC family protein -
  MWM16_RS02410 (TthSNM76_04700) - 415238..415525 (-) 288 WP_143586377.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  MWM16_RS02415 (TthSNM76_04710) - 415550..416113 (-) 564 WP_244340764.1 Uma2 family endonuclease -
  MWM16_RS02420 (TthSNM76_04720) guaA 416113..417624 (-) 1512 WP_244344860.1 glutamine-hydrolyzing GMP synthase -
  MWM16_RS02425 (TthSNM76_04730) luxS 417739..418206 (+) 468 WP_011173597.1 S-ribosylhomocysteine lyase Regulator
  MWM16_RS02430 (TthSNM76_04740) mtnN 418203..418865 (+) 663 WP_244344863.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  MWM16_RS02435 (TthSNM76_04750) - 418880..419803 (+) 924 WP_014510706.1 ribose-phosphate pyrophosphokinase -
  MWM16_RS02440 (TthSNM76_04760) uvrC 419854..421626 (-) 1773 WP_244344866.1 excinuclease ABC subunit UvrC -
  MWM16_RS02445 (TthSNM76_04770) - 421649..422611 (+) 963 WP_244344867.1 membrane dipeptidase -
  MWM16_RS02450 (TthSNM76_04780) - 422585..422998 (-) 414 WP_011173591.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16823.34 Da        Isoelectric Point: 6.7534

>NTDB_id=77793 MWM16_RS02425 WP_011173597.1 417739..418206(+) (luxS) [Thermus thermophilus strain SNM7-6]
MAEVESFSLDHTKVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLPGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFRECGNYRDHDLPGAKAWAEKVLKAGLRVQATVPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=77793 MWM16_RS02425 WP_011173597.1 417739..418206(+) (luxS) [Thermus thermophilus strain SNM7-6]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAAGGTCAAGGCTCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTTGCCCAGCCCAACCGGGAGGCCCTGCCCACGGGGGCCTTGCACA
CCCTGGAGCACCTCCTCGCAGGGTATTTGCGGGACCACCTCCCAGGGGTCATTGACCTCTCCCCCATGGGCTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAGGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTAAAGGCGGGGCTTAGGGTCCAGGCCACCGTTCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q72IE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.558

99.355

0.413