Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   SNM_RS10615 Genome accession   NZ_AP025613
Coordinates   1941678..1942487 (-) Length   269 a.a.
NCBI ID   WP_024119553.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1936678..1947487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS10585 (TthSNM66_20790) rsmI 1936839..1937633 (-) 795 WP_244341015.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  SNM_RS10590 (TthSNM66_20800) - 1937635..1938129 (-) 495 WP_011173970.1 hypothetical protein -
  SNM_RS10595 (TthSNM66_20810) - 1938193..1938720 (-) 528 WP_011173971.1 inorganic diphosphatase -
  SNM_RS10600 (TthSNM66_20820) - 1938753..1939379 (+) 627 WP_011173972.1 YcxB family protein -
  SNM_RS10605 (TthSNM66_20830) comEA 1939352..1939660 (+) 309 WP_024119555.1 helix-hairpin-helix domain-containing protein Machinery gene
  SNM_RS10610 (TthSNM66_20840) comA/comEC 1939657..1941690 (+) 2034 WP_244341018.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SNM_RS10615 (TthSNM66_20850) spo0J 1941678..1942487 (-) 810 WP_024119553.1 ParB/RepB/Spo0J family partition protein Regulator
  SNM_RS10620 (TthSNM66_20860) soj 1942471..1943220 (-) 750 WP_244346763.1 chromosome-partitioning ATPase Soj -
  SNM_RS10625 (TthSNM66_20870) rsmG 1943214..1943963 (-) 750 WP_244346772.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29778.62 Da        Isoelectric Point: 10.1529

>NTDB_id=77783 SNM_RS10615 WP_024119553.1 1941678..1942487(-) (spo0J) [Thermus thermophilus strain SNM6-6]
MSRKPSGLGRGLEALLPKTGAGVVRLPLASIRPNPRQPRKRFAEESLKELADSIREKGLLQPLLVRPQGDGYELVAGERR
YRAALMAGLQEVPAVVKDLTDREALELALVENLQREDLSPVEEARGYQALLEMGLTQEEVARRVGKARSTVANALRLLQL
PPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGLSVRQAEALRERLAMASRRPAEPSPLSLELSRHLGLPVRV
VGGKKGKVVIQYRSLEELEALLRRLGYQA

Nucleotide


Download         Length: 810 bp        

>NTDB_id=77783 SNM_RS10615 WP_024119553.1 1941678..1942487(-) (spo0J) [Thermus thermophilus strain SNM6-6]
GTGTCCAGGAAGCCTAGTGGTCTCGGGCGGGGCCTCGAGGCCCTGCTCCCCAAGACGGGGGCGGGGGTGGTCCGCCTGCC
CCTTGCCAGCATCCGCCCCAACCCCCGCCAGCCGCGGAAGCGGTTCGCCGAGGAGAGCCTCAAGGAGCTCGCCGACTCCA
TCCGGGAGAAGGGCCTCCTCCAACCCCTCCTCGTCCGGCCCCAGGGGGACGGGTACGAGCTCGTGGCGGGGGAAAGGCGC
TACCGGGCCGCCCTCATGGCGGGGCTTCAGGAGGTCCCCGCCGTGGTCAAGGACCTCACGGACCGGGAGGCCTTGGAGCT
CGCCCTGGTGGAGAACCTCCAGCGGGAGGACCTCTCCCCCGTGGAGGAGGCCCGGGGTTACCAGGCCCTTTTGGAGATGG
GCCTCACCCAGGAGGAGGTGGCCCGGCGGGTGGGCAAGGCCCGCTCCACCGTGGCCAACGCCCTCAGGCTTCTCCAGCTT
CCCCCCGAGGCCCTCGAGGCCCTGGAGCGGGGGGAGATCACCGCGGGCCACGCCCGGGCCCTCCTCATGCTGGAGCCCGA
GGACCGGCTCTGGGGGCTTAAGGAGATCCTGGAGAAGGGGCTTTCCGTGCGGCAGGCGGAGGCCCTGAGGGAGCGCCTGG
CCATGGCTTCCAGGCGCCCCGCTGAGCCCTCCCCCCTCTCCCTGGAGCTCTCCCGCCACCTGGGCCTGCCCGTGAGGGTG
GTGGGGGGGAAGAAGGGCAAGGTGGTGATCCAGTACCGCTCCTTGGAGGAGCTGGAGGCCCTTCTGCGGCGCCTCGGCTA
CCAGGCGTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(26-112)

HTH domain found in ParB protein (HTH_ParB)

(162-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

41.2

92.937

0.383

Multiple sequence alignment