Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QYF47_RS01935 Genome accession   NZ_CP129263
Coordinates   413606..414073 (-) Length   155 a.a.
NCBI ID   WP_000340170.1    Uniprot ID   -
Organism   Escherichia coli strain STEC1588     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 408606..419073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF47_RS01910 (QYF47_01910) rpsG 408747..409217 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QYF47_RS01915 (QYF47_01915) fusA 409314..411428 (+) 2115 WP_000124700.1 elongation factor G -
  QYF47_RS01920 (QYF47_01920) tuf 411499..412683 (+) 1185 WP_000031783.1 elongation factor Tu -
  QYF47_RS01925 (QYF47_01925) bfd 412866..413060 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QYF47_RS01930 (QYF47_01930) bfr 413133..413609 (+) 477 WP_000675515.1 bacterioferritin -
  QYF47_RS01935 (QYF47_01935) pilD 413606..414073 (-) 468 WP_000340170.1 A24 family peptidase Machinery gene
  QYF47_RS01940 (QYF47_01940) rpsJ 414452..414763 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QYF47_RS01945 (QYF47_01945) rplC 414796..415425 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QYF47_RS01950 (QYF47_01950) rplD 415436..416041 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QYF47_RS01955 (QYF47_01955) rplW 416038..416340 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QYF47_RS01960 (QYF47_01960) rplB 416358..417179 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  QYF47_RS01965 (QYF47_01965) rpsS 417196..417474 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QYF47_RS01970 (QYF47_01970) rplV 417489..417821 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QYF47_RS01975 (QYF47_01975) rpsC 417839..418540 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QYF47_RS01980 (QYF47_01980) rplP 418553..418963 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16934.09 Da        Isoelectric Point: 8.1296

>NTDB_id=777818 QYF47_RS01935 WP_000340170.1 413606..414073(-) (pilD) [Escherichia coli strain STEC1588]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWPFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=777818 QYF47_RS01935 WP_000340170.1 413606..414073(-) (pilD) [Escherichia coli strain STEC1588]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGCCCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361