Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QYF42_RS15245 Genome accession   NZ_CP129259
Coordinates   3066035..3066664 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain STEC1587     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3061035..3071664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF42_RS15230 (QYF42_15230) helD 3061277..3063331 (-) 2055 WP_001315388.1 DNA helicase IV -
  QYF42_RS15235 (QYF42_15235) yccF 3063454..3063900 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QYF42_RS15240 (QYF42_15240) yccS 3063910..3066072 (+) 2163 WP_000875044.1 YccS family putative transporter -
  QYF42_RS15245 (QYF42_15245) sxy/tfoX 3066035..3066664 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QYF42_RS15250 (QYF42_15250) sulA 3066883..3067392 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QYF42_RS15255 (QYF42_15255) ompA 3067749..3068801 (+) 1053 WP_000750419.1 porin OmpA -
  QYF42_RS15260 (QYF42_15260) matP 3068876..3069328 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  QYF42_RS15265 (QYF42_15265) ycbZ 3069514..3071274 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=777775 QYF42_RS15245 WP_000839153.1 3066035..3066664(-) (sxy/tfoX) [Escherichia coli strain STEC1587]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=777775 QYF42_RS15245 WP_000839153.1 3066035..3066664(-) (sxy/tfoX) [Escherichia coli strain STEC1587]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1