Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   PML87_RS06740 Genome accession   NZ_CP116510
Coordinates   1400521..1402191 (-) Length   556 a.a.
NCBI ID   WP_003126213.1    Uniprot ID   A0A6I4XHK9
Organism   Enterococcus gallinarum strain K205-4a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395521..1407191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML87_RS06715 (PML87_06715) pstB 1395662..1396468 (-) 807 WP_003126219.1 phosphate ABC transporter ATP-binding protein PstB -
  PML87_RS06720 (PML87_06720) pstA 1396482..1397366 (-) 885 WP_003126218.1 phosphate ABC transporter permease PstA -
  PML87_RS06725 (PML87_06725) pstC 1397366..1398286 (-) 921 WP_003126217.1 phosphate ABC transporter permease subunit PstC -
  PML87_RS06730 (PML87_06730) - 1398405..1399259 (-) 855 WP_003126216.1 phosphate ABC transporter substrate-binding protein PstS -
  PML87_RS06735 (PML87_06735) - 1399670..1400398 (-) 729 WP_003126214.1 alpha/beta hydrolase -
  PML87_RS06740 (PML87_06740) recN 1400521..1402191 (-) 1671 WP_003126213.1 DNA repair protein RecN Machinery gene
  PML87_RS06745 (PML87_06745) argR 1402204..1402653 (-) 450 WP_003126212.1 arginine repressor -
  PML87_RS06750 (PML87_06750) - 1402747..1403577 (-) 831 WP_003126211.1 TlyA family RNA methyltransferase -
  PML87_RS06755 (PML87_06755) - 1403577..1404461 (-) 885 WP_003126210.1 polyprenyl synthetase family protein -
  PML87_RS06760 (PML87_06760) - 1404470..1404688 (-) 219 WP_003126209.1 exodeoxyribonuclease VII small subunit -
  PML87_RS06765 (PML87_06765) xseA 1404669..1406021 (-) 1353 WP_003126207.1 exodeoxyribonuclease VII large subunit -
  PML87_RS06770 (PML87_06770) - 1406023..1406874 (-) 852 WP_003126206.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62859.85 Da        Isoelectric Point: 4.4477

>NTDB_id=777741 PML87_RS06740 WP_003126213.1 1400521..1402191(-) (recN) [Enterococcus gallinarum strain K205-4a]
MLLELTIQNFAIISHLHLSFHEGMTALTGETGAGKSIIIDAMGLLAGGRGSTDYLRQGAEKCRLEGLFEWPQQSEFQELT
EELGIDQEDVLIVQRDITQAGKTICRVNGRTVTLANLRKIGLFLVDIQGQNEHQELLQPERHLSLVDGFGDDGFKEELLH
YQDAYQEYRNLEKQVRNIQENEQLYVQRMDMLRFQQEEIAQAELIEGEEENLIEEREKLTNYQKIVDALGQSYGALSSEE
MSSVDGVSVALSEIQSIAHLDQAYEKITETIQSAYYLLQDAASDISRQLDNLELDEGRLEEVINRLETIRQLKRKYGESI
SVILAYYEEISKEISESAYTEGQLEQLEEQLTAKADAVWALAEQLHVKRREIAHRLEKEIVQELNDLYMEHAQFEVRFAN
GKQLTATGFDSVAFYLTTNPGEGMKPLVRVASGGELSRILLALKSIFSRKQGITSIVFDEVDTGVSGRVAQAIAEKISKI
ALNSQVLCITHLPQVAAVADYQYFIEKAIQEGRTETRVRQLSYEERVTEIARMLSGAEITELTVEHARELLALAHQ

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=777741 PML87_RS06740 WP_003126213.1 1400521..1402191(-) (recN) [Enterococcus gallinarum strain K205-4a]
ATGCTTTTAGAGTTGACCATTCAAAATTTCGCAATTATTTCCCACTTACACCTTTCTTTTCATGAAGGAATGACAGCTTT
GACAGGTGAAACAGGTGCCGGGAAATCAATCATTATTGATGCGATGGGCTTGTTAGCCGGCGGACGCGGATCTACTGACT
ACTTGCGTCAAGGAGCAGAGAAATGCCGACTGGAAGGCCTTTTTGAATGGCCGCAGCAGTCTGAGTTTCAAGAACTGACA
GAAGAATTAGGCATTGATCAAGAAGATGTGCTGATCGTCCAACGGGATATCACACAAGCAGGAAAAACAATCTGTCGTGT
CAATGGACGTACGGTCACCTTGGCAAATCTGCGAAAGATTGGTCTTTTTTTAGTTGATATTCAAGGACAAAACGAACATC
AAGAGTTATTACAGCCGGAAAGGCATCTTAGCTTGGTAGATGGGTTTGGCGATGATGGTTTCAAAGAAGAACTGCTGCAC
TATCAGGATGCCTATCAGGAATACCGCAATTTAGAAAAACAGGTTCGCAATATTCAGGAAAATGAACAATTATATGTTCA
ACGGATGGATATGCTGCGATTCCAACAAGAAGAAATCGCACAGGCTGAATTAATCGAGGGCGAAGAAGAAAATCTGATCG
AAGAACGTGAGAAGTTAACCAACTATCAGAAAATCGTCGATGCACTGGGGCAAAGTTATGGTGCGCTCTCTTCAGAAGAA
ATGAGCAGTGTCGACGGTGTGAGTGTGGCACTGTCCGAGATCCAATCTATCGCCCACTTAGATCAAGCCTATGAAAAAAT
CACTGAAACGATCCAGAGCGCTTATTATTTGTTGCAGGATGCTGCTTCTGATATTTCACGACAATTAGATAACCTTGAAC
TTGATGAAGGACGTCTAGAAGAAGTTATCAACCGACTGGAAACGATTCGTCAATTGAAGCGCAAATACGGCGAGTCCATC
TCCGTCATCCTAGCTTATTATGAAGAAATTAGTAAGGAGATCTCTGAATCTGCCTATACTGAAGGCCAGCTGGAACAGTT
AGAAGAGCAATTGACAGCTAAGGCCGATGCTGTTTGGGCTCTTGCTGAACAACTCCATGTCAAGCGGCGAGAAATCGCAC
ATCGATTAGAAAAAGAAATTGTGCAAGAATTGAACGACCTCTATATGGAACATGCACAGTTTGAAGTTCGCTTTGCAAAT
GGCAAGCAGTTGACAGCTACTGGATTTGATAGTGTGGCTTTTTATCTCACGACCAATCCTGGGGAAGGCATGAAGCCGTT
GGTTCGGGTAGCATCTGGGGGTGAGCTGTCTCGTATCTTATTAGCATTGAAATCGATTTTTTCACGGAAACAAGGGATCA
CGAGTATTGTTTTTGACGAAGTAGATACCGGAGTCAGTGGCCGCGTGGCGCAAGCAATTGCTGAAAAGATCTCAAAAATT
GCGTTGAATTCCCAAGTATTGTGTATCACTCATTTGCCGCAAGTAGCCGCAGTAGCTGATTATCAATATTTTATTGAAAA
AGCGATCCAAGAAGGACGGACGGAGACTCGAGTTCGTCAGTTATCCTATGAAGAACGAGTGACTGAGATTGCTCGTATGT
TATCAGGAGCAGAAATCACAGAACTGACAGTAGAGCATGCGCGTGAATTGTTAGCCTTGGCTCATCAGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I4XHK9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.203

100

0.486