Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QYF42_RS01945 Genome accession   NZ_CP129259
Coordinates   420971..421438 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain STEC1587     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 415971..426438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYF42_RS01920 (QYF42_01920) rpsG 416112..416582 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  QYF42_RS01925 (QYF42_01925) fusA 416679..418793 (+) 2115 WP_000124700.1 elongation factor G -
  QYF42_RS01930 (QYF42_01930) tuf 418864..420048 (+) 1185 WP_000031783.1 elongation factor Tu -
  QYF42_RS01935 (QYF42_01935) bfd 420231..420425 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QYF42_RS01940 (QYF42_01940) bfr 420498..420974 (+) 477 WP_000675515.1 bacterioferritin -
  QYF42_RS01945 (QYF42_01945) pilD 420971..421438 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  QYF42_RS01950 (QYF42_01950) rpsJ 421817..422128 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  QYF42_RS01955 (QYF42_01955) rplC 422161..422790 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  QYF42_RS01960 (QYF42_01960) rplD 422801..423406 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  QYF42_RS01965 (QYF42_01965) rplW 423403..423705 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  QYF42_RS01970 (QYF42_01970) rplB 423723..424544 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  QYF42_RS01975 (QYF42_01975) rpsS 424561..424839 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  QYF42_RS01980 (QYF42_01980) rplV 424854..425186 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  QYF42_RS01985 (QYF42_01985) rpsC 425204..425905 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  QYF42_RS01990 (QYF42_01990) rplP 425918..426328 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=777739 QYF42_RS01945 WP_000340171.1 420971..421438(-) (pilD) [Escherichia coli strain STEC1587]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=777739 QYF42_RS01945 WP_000340171.1 420971..421438(-) (pilD) [Escherichia coli strain STEC1587]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361