Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PML95_RS01075 Genome accession   NZ_CP116507
Coordinates   217119..218930 (-) Length   603 a.a.
NCBI ID   WP_272163423.1    Uniprot ID   A0AAF0BID5
Organism   Vagococcus lutrae strain K204-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 212119..223930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML95_RS01035 (PML95_01035) rplT 212457..212816 (-) 360 WP_023605496.1 50S ribosomal protein L20 -
  PML95_RS01040 (PML95_01040) rpmI 212862..213062 (-) 201 WP_023605495.1 50S ribosomal protein L35 -
  PML95_RS01045 (PML95_01045) infC 213089..213610 (-) 522 WP_023605494.1 translation initiation factor IF-3 -
  PML95_RS01050 (PML95_01050) - 213881..214594 (+) 714 WP_272163418.1 uracil-DNA glycosylase -
  PML95_RS01055 (PML95_01055) - 214623..215132 (-) 510 WP_272163419.1 gamma carbonic anhydrase family protein -
  PML95_RS01060 (PML95_01060) - 215161..215337 (-) 177 WP_272163420.1 hypothetical protein -
  PML95_RS01065 (PML95_01065) - 215338..216018 (-) 681 WP_272163421.1 NAD(P)H-dependent oxidoreductase -
  PML95_RS01070 (PML95_01070) - 216044..217063 (-) 1020 WP_272163422.1 zinc-binding alcohol dehydrogenase family protein -
  PML95_RS01075 (PML95_01075) pepF 217119..218930 (-) 1812 WP_272163423.1 oligoendopeptidase F Regulator
  PML95_RS01080 (PML95_01080) - 218977..220170 (-) 1194 WP_272163424.1 competence protein CoiA -
  PML95_RS01085 (PML95_01085) - 220250..221518 (-) 1269 WP_272163425.1 NCS2 family permease -
  PML95_RS01090 (PML95_01090) - 221691..223106 (-) 1416 WP_272163426.1 helix-turn-helix domain-containing protein -
  PML95_RS01095 (PML95_01095) udk 223252..223887 (-) 636 WP_023607084.1 uridine kinase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 68990.65 Da        Isoelectric Point: 4.7738

>NTDB_id=777688 PML95_RS01075 WP_272163423.1 217119..218930(-) (pepF) [Vagococcus lutrae strain K204-1]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMESTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKIRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=777688 PML95_RS01075 WP_272163423.1 217119..218930(-) (pepF) [Vagococcus lutrae strain K204-1]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGGACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGTTAGAAACGTTGTATGTTTATTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTCGAACTAACAGATGAACAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCACTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCTGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATTTTAAATAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAGTACTGATCCAA
AAGTGCGAGAAGCTGCGTTTAAAGGGCTATATCAAGTGTATGAACAGTTTCAAAATACATTGGCAACGACGCTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAATTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAATCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTACCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCATTAGGGGAAGAATATGGTAAAGTCGTCCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGTAGTGGAGCTTATTCATCAGGAGCTTACGATACAGTGC
CTTATATTTTAATGAACTGGCATGATAGTTTAGACCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGTGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACACAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGCGACTACTTAAACGATTACTATGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAGTGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCTATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGACCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.342

0.539