Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PML89_RS06500 Genome accession   NZ_CP116503
Coordinates   1359255..1361066 (+) Length   603 a.a.
NCBI ID   WP_252999595.1    Uniprot ID   -
Organism   Vagococcus lutrae strain K136-2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1354255..1366066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PML89_RS06480 (PML89_06480) udk 1354298..1354933 (+) 636 WP_023607084.1 uridine kinase -
  PML89_RS06485 (PML89_06485) - 1355079..1356494 (+) 1416 WP_248856428.1 helix-turn-helix domain-containing protein -
  PML89_RS06490 (PML89_06490) - 1356667..1357935 (+) 1269 WP_222316870.1 NCS2 family permease -
  PML89_RS06495 (PML89_06495) - 1358015..1359208 (+) 1194 WP_252999594.1 competence protein CoiA -
  PML89_RS06500 (PML89_06500) pepF 1359255..1361066 (+) 1812 WP_252999595.1 oligoendopeptidase F Regulator
  PML89_RS06505 (PML89_06505) - 1361123..1362142 (+) 1020 WP_252999596.1 zinc-binding alcohol dehydrogenase family protein -
  PML89_RS06510 (PML89_06510) - 1362168..1362848 (+) 681 WP_252999597.1 NAD(P)H-dependent oxidoreductase -
  PML89_RS06515 (PML89_06515) - 1362849..1363025 (+) 177 WP_252999598.1 hypothetical protein -
  PML89_RS06520 (PML89_06520) - 1363054..1363563 (+) 510 WP_222316863.1 gamma carbonic anhydrase family protein -
  PML89_RS06525 (PML89_06525) - 1363591..1364304 (-) 714 WP_252999599.1 uracil-DNA glycosylase -
  PML89_RS06530 (PML89_06530) infC 1364575..1365096 (+) 522 WP_023605494.1 translation initiation factor IF-3 -
  PML89_RS06535 (PML89_06535) rpmI 1365123..1365323 (+) 201 WP_023605495.1 50S ribosomal protein L35 -
  PML89_RS06540 (PML89_06540) rplT 1365369..1365728 (+) 360 WP_023605496.1 50S ribosomal protein L20 -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69003.65 Da        Isoelectric Point: 4.7738

>NTDB_id=777680 PML89_RS06500 WP_252999595.1 1359255..1361066(+) (pepF) [Vagococcus lutrae strain K136-2]
MSTPHELPKRDALPVEVTWDLTKIFENDEAFETALKEFEAKIPEVQAIKGTLAQGADAFKKALDLTLALSRELETLYVYS
HLKNDQDTANAFYQGMNSRMESMIAKTSEAISWFQPELFELTDEQIWAYFDELPELEIYRHYITSMLADRPHVLSEQEEA
LLAGAGEIFGSAGKTFSILNNADLEFPVIENEKGEKVKLSHGVYGQLMENTDPKVREAAFKGLYQVYEQFQNTLATTLST
NVKVHNYRAKVRHFSSAREAALSANHIPESVHDTLISVVHEHLPLLHRYVALRKKLLKVDSLHMYDMYTPILGDAPIRYS
YDEAVEKSKVALKPLGEEYGKVVQEAYENRWIDVVENQGKRSGAYSSGAYDTVPYILMNWHDSLDQLYTLVHEMGHSVHS
YFTRSNQPYVYGDYSIFLAEIASTTNENILTEHLLATETDPKVRAFILNRYLDGFKGTVFRQTQFAEFEHFIHEEDAKGV
PLTSDYLNDYYADLNAKYYGPAVERDPEIALEWSRIPHFYYNYYVYQYSTGFAAASALADKIVKGEEGALDKYLTYLKAG
RSDYPIEIMKKAGVDMTQATYLEEAMKVFEARLNEFETLVDQL

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=777680 PML89_RS06500 WP_252999595.1 1359255..1361066(+) (pepF) [Vagococcus lutrae strain K136-2]
ATGAGTACACCACATGAATTACCAAAACGTGACGCACTTCCAGTAGAAGTGACATGGGATTTAACGAAGATTTTTGAAAA
TGACGAGGCGTTTGAAACGGCTCTTAAAGAATTTGAAGCAAAAATACCAGAGGTTCAAGCTATAAAGGGAACATTGGCGC
AAGGAGCTGACGCATTTAAAAAAGCTTTAGACTTAACGTTAGCCCTTTCTCGTGAGCTAGAAACGTTGTATGTTTACTCT
CATTTAAAGAATGACCAAGATACAGCGAATGCTTTTTATCAAGGAATGAACAGTCGGATGGAAAGCATGATTGCTAAAAC
AAGTGAAGCTATTTCATGGTTCCAACCAGAATTATTTGAACTAACAGATGAGCAAATTTGGGCGTATTTTGATGAACTTC
CAGAATTAGAAATTTATCGTCATTATATTACCTCTATGCTAGCAGACCGTCCACATGTTTTATCAGAACAAGAAGAAGCA
CTGTTAGCCGGTGCAGGTGAGATTTTTGGTTCAGCAGGTAAGACGTTCTCTATCTTAAATAATGCGGATTTAGAGTTTCC
AGTCATTGAAAATGAAAAAGGTGAAAAAGTTAAACTTTCACATGGTGTTTATGGACAATTAATGGAAAATACTGATCCGA
AAGTGCGAGAAGCTGCGTTTAAAGGATTATACCAAGTGTATGAACAGTTCCAAAATACATTGGCAACGACACTTTCAACG
AATGTTAAAGTGCATAATTACCGTGCGAAAGTTCGCCATTTTTCTTCAGCACGTGAAGCGGCATTGTCAGCTAACCACAT
TCCAGAATCCGTTCATGATACTTTGATTTCTGTGGTACATGAGCATTTACCGTTATTACATCGCTATGTGGCTTTACGTA
AAAAACTTCTTAAAGTAGACAGTTTACATATGTATGATATGTATACACCTATTTTAGGAGATGCGCCAATTCGTTATTCT
TATGACGAAGCTGTTGAAAAATCAAAAGTCGCATTAAAACCTTTAGGGGAAGAATATGGCAAAGTCGTTCAAGAAGCTTA
TGAGAATCGTTGGATTGACGTTGTTGAAAACCAAGGAAAACGCAGTGGAGCATATTCATCAGGGGCTTACGATACAGTAC
CTTATATTTTAATGAACTGGCATGATAGTTTAGATCAATTGTATACATTAGTGCATGAGATGGGACACAGTGTTCATAGT
TACTTTACACGTTCAAATCAACCTTATGTTTACGGCGATTATTCTATTTTCTTAGCTGAGATTGCCTCAACGACAAACGA
AAACATCTTAACGGAGCACTTATTAGCGACAGAAACGGATCCAAAAGTACGCGCATTTATTTTAAATCGTTACTTAGACG
GTTTCAAAGGAACTGTTTTCCGTCAAACGCAGTTTGCGGAATTTGAGCATTTCATTCACGAAGAAGATGCAAAAGGAGTT
CCACTAACAAGCGACTACTTAAACGATTACTACGCTGATTTAAACGCGAAGTATTATGGACCAGCTGTGGAGCGTGATCC
TGAGATTGCTTTAGAATGGTCACGTATTCCTCATTTCTACTACAATTATTATGTTTATCAGTATTCAACAGGTTTTGCAG
CTGCTTCAGCATTAGCTGATAAGATTGTAAAAGGCGAAGAAGGTGCTTTAGATAAGTACTTGACCTATCTAAAAGCTGGT
CGCAGTGACTATCCAATTGAAATTATGAAAAAAGCAGGCGTCGATATGACTCAAGCAACTTATTTAGAAGAAGCAATGAA
AGTCTTTGAAGCGCGATTAAATGAATTTGAAACATTAGTGGATCAATTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.342

0.539