Detailed information NTG0777679

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PML89_RS06375
• Genome accession: NZ_CP116503
• Coordinates: 1333861..1335231 (+)
• Length: 456 a.a.
• NCBI ID: WP_252998965.1
• Uniprot ID: -
• Organism: Vagococcus lutrae strain K136-2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1328861..1340231

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PML89_RS06350 (PML89_06350)	-	1330041..1330760 (+)	720	WP_252998968.1	pseudouridine synthase	-
PML89_RS06355 (PML89_06355)	-	1330874..1331188 (+)	315	WP_023607060.1	rhodanese-like domain-containing protein	-
PML89_RS06360 (PML89_06360)	-	1331189..1332835 (+)	1647	WP_252998967.1	FAD-dependent oxidoreductase	-
PML89_RS06365 (PML89_06365)	-	1332850..1333107 (+)	258	WP_126762350.1	metal-sensing transcriptional repressor	-
PML89_RS06370 (PML89_06370)	-	1333223..1333756 (+)	534	WP_252998966.1	dUTP diphosphatase	-
PML89_RS06375 (PML89_06375)	radA	1333861..1335231 (+)	1371	WP_252998965.1	DNA repair protein RadA	Machinery gene
PML89_RS06380 (PML89_06380)	-	1335250..1336380 (+)	1131	WP_252998964.1	PIN/TRAM domain-containing protein	-
PML89_RS06385 (PML89_06385)	gltX	1336476..1337942 (+)	1467	WP_252998963.1	glutamate--tRNA ligase	-
PML89_RS06390 (PML89_06390)	epsC	1338149..1338754 (+)	606	WP_272158218.1	serine O-acetyltransferase EpsC	-
PML89_RS06395 (PML89_06395)	cysS	1338738..1340156 (+)	1419	WP_252998962.1	cysteine--tRNA ligase	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50116.58 Da
• Isoelectric Point: 6.1967

>NTDB_id=777679 PML89_RS06375 WP_252998965.1 1333861..1335231(+) (radA) [Vagococcus lutrae strain K136-2]
MAKKQRTQFECQACGYISPKYLGRCPNCGAWNEMMEVKIQEEPDRHSRVSLAGKRTTAKRLTEVAMEKEPRVKTQMDELN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSQQLNQADGVVLYVSGEESAEQIKMRAERLGIKGNDFYIYPETDMSQIRQ
TIEDLQPDYVIIDSIQTMMQPEIASASGSVSQVRETTAELMQIAKTNHIAIFIVGHVTKEGALAGPRMLEHMVDTVLYFE
GDRHHTFRILRAVKNRFGSTNEIGIFEMVESGLQEVLNPSEVFLEERLDGATGSAIVVSMEGSRPILAEVQALVSPTLFG
NAKRTATGLDYNRVSLIMAVLEKRAGLLLQNQDAYLKAAGGVKLDEPAIDLAIAMSIASSYKDTGTSATECFIGEIGLTG
EIRRVNRIDQRIREAQKLGFKKVYVPKNNLHGYTPPADIEVVGIATLSEALRKVFP

Nucleotide

• Length: 1371 bp

>NTDB_id=777679 PML89_RS06375 WP_252998965.1 1333861..1335231(+) (radA) [Vagococcus lutrae strain K136-2]
GTGGCGAAAAAGCAACGTACACAATTTGAATGTCAAGCATGCGGTTACATTTCTCCTAAATATTTAGGTAGATGCCCTAA
CTGCGGTGCTTGGAATGAAATGATGGAAGTGAAGATACAAGAAGAACCTGACCGTCATAGTCGCGTCAGCCTAGCTGGTA
AGCGAACAACGGCTAAGCGATTAACAGAAGTAGCGATGGAAAAAGAACCCCGTGTAAAAACACAAATGGACGAGCTTAAT
CGTGTGTTGGGTGGTGGCGTTGTTCCCGGATCGCTTGTTTTAATTGGTGGAGACCCAGGGATTGGGAAATCTACGTTGTT
ACTACAAGTTTCGCAACAGCTTAATCAAGCTGATGGCGTAGTTTTATACGTGTCTGGCGAAGAAAGTGCCGAGCAGATAA
AAATGCGTGCGGAGCGTTTAGGGATTAAAGGTAATGATTTTTATATTTATCCAGAAACAGATATGTCTCAAATACGTCAA
ACTATCGAAGACTTACAACCAGACTATGTCATCATTGATTCCATTCAGACGATGATGCAACCGGAGATAGCCAGTGCATC
AGGTAGTGTGAGTCAAGTCCGAGAAACGACTGCTGAGTTAATGCAAATCGCTAAAACTAATCATATTGCTATTTTTATCG
TAGGCCATGTGACAAAGGAAGGCGCCTTAGCAGGTCCTAGAATGTTAGAACATATGGTAGATACGGTGTTGTATTTTGAA
GGGGATCGTCATCATACCTTTCGAATTTTGCGAGCGGTAAAAAACCGTTTTGGATCGACAAATGAGATTGGGATATTTGA
GATGGTGGAGTCGGGCTTACAGGAAGTCTTAAATCCTTCTGAAGTCTTCTTAGAAGAGCGATTAGACGGTGCGACTGGTT
CTGCGATTGTGGTGTCGATGGAAGGCAGTCGTCCGATTTTAGCAGAAGTTCAAGCTCTTGTATCTCCTACTTTATTTGGA
AACGCAAAGCGGACAGCGACTGGGTTAGATTATAACCGGGTGTCATTGATTATGGCAGTGTTAGAAAAACGAGCCGGTCT
TTTGTTGCAAAATCAAGATGCGTATTTAAAAGCTGCTGGTGGTGTTAAGCTAGATGAACCGGCGATTGACTTAGCCATTG
CGATGAGTATCGCTTCGAGCTACAAAGATACGGGAACTAGTGCTACCGAGTGTTTTATTGGCGAAATTGGTTTGACCGGT
GAAATACGACGGGTGAATCGGATTGATCAACGCATTAGAGAAGCTCAAAAGTTAGGCTTTAAAAAAGTGTACGTACCAAA
AAACAATTTACATGGATATACACCGCCAGCTGATATTGAAGTGGTTGGAATTGCCACCTTATCAGAAGCGTTAAGAAAAG
TTTTTCCTTAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-34)

• AAA domain (AAA_25) (71-221)

• Subunit ChlI of Mg-chelatase (ChlI) (363-429)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	74.286	99.781	0.741
radA	Streptococcus mitis SK321	74.286	99.781	0.741
radA	Streptococcus pneumoniae Rx1	74.066	99.781	0.739
radA	Streptococcus pneumoniae D39	74.066	99.781	0.739
radA	Streptococcus pneumoniae R6	74.066	99.781	0.739
radA	Streptococcus pneumoniae TIGR4	74.066	99.781	0.739
radA	Bacillus subtilis subsp. subtilis str. 168	65.708	99.123	0.651