Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   QWY26_RS10665 Genome accession   NZ_CP129245
Coordinates   2235596..2236231 (-) Length   211 a.a.
NCBI ID   WP_000264042.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 13A297n     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230596..2241231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWY26_RS10640 (QWY26_10640) - 2230652..2231632 (-) 981 WP_001075418.1 DNA polymerase III subunit delta' -
  QWY26_RS10645 (QWY26_10645) kdsB 2231644..2232405 (-) 762 WP_000680701.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  QWY26_RS10650 (QWY26_10650) lpxK 2232415..2233425 (-) 1011 WP_000050452.1 tetraacyldisaccharide 4'-kinase -
  QWY26_RS10655 (QWY26_10655) msbA 2233428..2235155 (-) 1728 WP_001070738.1 lipid A export permease/ATP-binding protein MsbA -
  QWY26_RS10660 (QWY26_10660) - 2235152..2235580 (-) 429 WP_000669680.1 biopolymer transporter ExbD -
  QWY26_RS10665 (QWY26_10665) exbB 2235596..2236231 (-) 636 WP_000264042.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  QWY26_RS10670 (QWY26_10670) - 2236281..2237168 (-) 888 WP_000023429.1 ParB/RepB/Spo0J family partition protein -
  QWY26_RS10675 (QWY26_10675) - 2237165..2237947 (-) 783 WP_000057212.1 ParA family protein -
  QWY26_RS10680 (QWY26_10680) rsmG 2237969..2238601 (-) 633 WP_000553196.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  QWY26_RS10685 (QWY26_10685) murU 2238689..2239378 (-) 690 WP_000646455.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  QWY26_RS10690 (QWY26_10690) - 2239378..2240391 (-) 1014 WP_001096098.1 phosphotransferase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23224.13 Da        Isoelectric Point: 6.2379

>NTDB_id=777615 QWY26_RS10665 WP_000264042.1 2235596..2236231(-) (exbB) [Acinetobacter baumannii strain 13A297n]
MWELVKAGGWLMLPLILCSILTVAISIERFVRLRRSQVLPKVLMNDGSADISVVITNLEQDTNAQSTALGNILKAGFEYQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQDYIAELEQQSTLFHASLFYKRSSVMQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=777615 QWY26_RS10665 WP_000264042.1 2235596..2236231(-) (exbB) [Acinetobacter baumannii strain 13A297n]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACCGTCGCAATTAGTAT
TGAGCGTTTTGTACGTTTAAGACGTTCACAAGTTTTACCTAAAGTACTAATGAATGATGGCAGTGCAGATATTTCTGTTG
TTATAACAAATTTGGAGCAGGATACTAATGCGCAAAGCACGGCATTGGGCAATATTCTAAAAGCTGGTTTTGAGTATCAG
GAACATGGCGAACAATTTGCGCGAGCACAAATGGAAGCTATGGCTTCTCAAGAAATTTCTTATTTAGAGAAAAATATTAA
CTTCTTAGGAACCTTAAGTGCTATTGCGCCTTTACTAGGACTGCTTGGAACAGTTGTGGGAATTATTGAGTCTTTTTTGG
TTATTGATTTTGGTTCGGCAGGTAGTCCTAGTTTAATGATTCCCGGTATTTCCAAGGCTTTGATCACAACAGCAGTTGGT
ATGCTCATTGCAATTCCTGCGCTTATTTCCTATCGATATTTTCAAAGAGTAGTGCAAGATTATATTGCTGAGTTAGAGCA
ACAATCTACGCTATTTCATGCCTCATTGTTTTACAAACGTTCTTCAGTCATGCAAGAACATCGCCGCGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

43.455

90.521

0.393