Detailed information NTG0777569

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QU831_RS23495
• Genome accession: NZ_CP129240
• Coordinates: 4706538..4707530 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1344_LBHALD
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4701538..4712530

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QU831_RS23475 (QU831_23475)	otnK	4702313..4703575 (+)	1263	WP_000590392.1	3-oxo-tetronate kinase	-
QU831_RS23480 (QU831_23480)	ygbL	4703572..4704210 (+)	639	WP_001278994.1	aldolase	-
QU831_RS23485 (QU831_23485)	ygbM	4704215..4704991 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
QU831_RS23490 (QU831_23490)	ygbN	4705080..4706444 (+)	1365	WP_000104456.1	GntP family transporter	-
QU831_RS23495 (QU831_23495)	rpoS	4706538..4707530 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QU831_RS23500 (QU831_23500)	nlpD	4707593..4708687 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
QU831_RS23505 (QU831_23505)	pcm	4708872..4709498 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QU831_RS23510 (QU831_23510)	surE	4709492..4710253 (-)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
QU831_RS23515 (QU831_23515)	truD	4710234..4711283 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
QU831_RS23520 (QU831_23520)	ispF	4711280..4711759 (-)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QU831_RS23525 (QU831_23525)	ispD	4711759..4712469 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=777569 QU831_RS23495 WP_000081550.1 4706538..4707530(-) (rpoS) [Escherichia coli strain 1344_LBHALD]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=777569 QU831_RS23495 WP_000081550.1 4706538..4707530(-) (rpoS) [Escherichia coli strain 1344_LBHALD]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715