Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   E5Q65_RS00470 Genome accession   NZ_CP116480
Coordinates   101779..102408 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain GTEN_24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 96779..107408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q65_RS00450 ycbZ 97169..98929 (-) 1761 WP_000156526.1 AAA family ATPase -
  E5Q65_RS00455 matP 99115..99567 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  E5Q65_RS00460 ompA 99642..100694 (-) 1053 WP_000750419.1 porin OmpA -
  E5Q65_RS00465 sulA 101051..101560 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  E5Q65_RS00470 sxy/tfoX 101779..102408 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  E5Q65_RS00475 yccS 102371..104533 (-) 2163 WP_000875019.1 YccS family putative transporter -
  E5Q65_RS00480 yccF 104543..104989 (-) 447 WP_001261235.1 YccF domain-containing protein -
  E5Q65_RS00485 helD 105112..107166 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=777503 E5Q65_RS00470 WP_000839153.1 101779..102408(+) (sxy/tfoX) [Escherichia coli strain GTEN_24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=777503 E5Q65_RS00470 WP_000839153.1 101779..102408(+) (sxy/tfoX) [Escherichia coli strain GTEN_24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1