Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QU831_RS03145 Genome accession   NZ_CP129240
Coordinates   665357..665986 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 1344_LBHALD     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 660357..670986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU831_RS03125 (QU831_03125) ycbZ 660746..662506 (-) 1761 WP_000156526.1 Lon protease family protein -
  QU831_RS03130 (QU831_03130) matP 662692..663144 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QU831_RS03135 (QU831_03135) ompA 663220..664272 (-) 1053 WP_001361736.1 porin OmpA -
  QU831_RS03140 (QU831_03140) sulA 664629..665138 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QU831_RS03145 (QU831_03145) sxy/tfoX 665357..665986 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QU831_RS03150 (QU831_03150) yccS 665949..668111 (-) 2163 WP_000875023.1 YccS family putative transporter -
  QU831_RS03155 (QU831_03155) yccF 668121..668567 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QU831_RS03160 (QU831_03160) helD 668690..670744 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=777501 QU831_RS03145 WP_000839153.1 665357..665986(+) (sxy/tfoX) [Escherichia coli strain 1344_LBHALD]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=777501 QU831_RS03145 WP_000839153.1 665357..665986(+) (sxy/tfoX) [Escherichia coli strain 1344_LBHALD]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1