Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   O1Q74_RS02260 Genome accession   NZ_CP116477
Coordinates   478545..479927 (-) Length   460 a.a.
NCBI ID   WP_271875911.1    Uniprot ID   -
Organism   Pectobacterium sp. A5351     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473545..484927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O1Q74_RS02230 (O1Q74_02230) pepP 473716..475041 (-) 1326 WP_271875907.1 Xaa-Pro aminopeptidase -
  O1Q74_RS02235 (O1Q74_02235) - 475116..475703 (-) 588 WP_271875908.1 YecA family protein -
  O1Q74_RS02240 (O1Q74_02240) zapA 475896..476225 (+) 330 WP_012773157.1 cell division protein ZapA -
  O1Q74_RS02250 (O1Q74_02250) - 476523..477164 (+) 642 WP_271875909.1 5-formyltetrahydrofolate cyclo-ligase -
  O1Q74_RS02255 (O1Q74_02255) nadR 477161..478414 (-) 1254 WP_271875910.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  O1Q74_RS02260 (O1Q74_02260) radA 478545..479927 (-) 1383 WP_271875911.1 DNA repair protein RadA Machinery gene
  O1Q74_RS02265 (O1Q74_02265) serB 479945..480922 (-) 978 WP_271875912.1 phosphoserine phosphatase -
  O1Q74_RS02270 (O1Q74_02270) - 481079..481774 (+) 696 WP_271875913.1 YtjB family periplasmic protein -
  O1Q74_RS02275 (O1Q74_02275) prfC 482004..483593 (+) 1590 WP_271875914.1 peptide chain release factor 3 -
  O1Q74_RS02280 (O1Q74_02280) osmY 484097..484705 (+) 609 WP_271875915.1 molecular chaperone OsmY -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49637.22 Da        Isoelectric Point: 7.6670

>NTDB_id=777482 O1Q74_RS02260 WP_271875911.1 478545..479927(-) (radA) [Pectobacterium sp. A5351]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASTSTSRTDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FLEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQERPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=777482 O1Q74_RS02260 WP_271875911.1 478545..479927(-) (radA) [Pectobacterium sp. A5351]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGTGGAGCTGACTATCCGCGCTGGCAAGGACAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACTGAAGTTCGCCTGGCATCGACGTCAACGTCACGCACTGACCGCCTCACTGGCTATG
CGGGTGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTTTCGGAAATCAGCCTTGAAGCCCTGCCTCGCTTTTCTACCGGC
TTTCTGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAAAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTTAATCTGCCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACGGCCGAAGCTAATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTATCTGACACGCTTCGCCAAAACGCGCGGCGTCG
CTATCGTGATGGTCGGCCACGTCACCAAAGATGGTTCGCTCGCCGGGCCGAAAGTATTGGAACACTGCATCGACTGTTCC
GTCCTGCTGGACGGCGATGCCGATTCCCGCTTCCGTACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAGCT
GGGTGTGTTCGCGATGACGGAACAAGGGCTACGCGAGGTCAGCAATCCATCAGCGATTTTCCTCAGTCGCGGGGACGAAG
TGACGTCCGGTAGTTCCGTGATGGTGGTGTGGGAAGGTACGCGCCCGCTGCTGGTCGAAATTCAGGCACTGGTGGATCAA
TCGATGATGTCCAACCCGCGCCGCGTGGCGGTCGGTCTGGAGCAAAACCGCCTAGCCATCCTGTTAGCAGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTTGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGTGCCG
ATCTGGCGCTGCTGTTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTCGTCATCTTCGGCGAAGTC
GGCCTGGCGGGCGAAATCCGCCCAGTTCCTAGCGGACAAGAGCGGATTACCGAAGCCGCTAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGTATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCAATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(89-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426