Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   QYE79_RS17220 Genome accession   NZ_CP129200
Coordinates   3641492..3642517 (-) Length   341 a.a.
NCBI ID   WP_003097294.1    Uniprot ID   A0A0H2ZJL6
Organism   Pseudomonas aeruginosa strain PA942     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636492..3647517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS17195 (QYE79_17195) aroE 3636694..3637518 (-) 825 WP_003097314.1 shikimate dehydrogenase -
  QYE79_RS17200 (QYE79_17200) hemF 3637576..3638493 (-) 918 WP_003097311.1 oxygen-dependent coproporphyrinogen oxidase -
  QYE79_RS17205 (QYE79_17205) - 3638684..3639661 (+) 978 WP_003097303.1 NADPH:quinone reductase -
  QYE79_RS17210 (QYE79_17210) - 3639671..3640228 (-) 558 WP_003097300.1 Sua5/YciO/YrdC/YwlC family protein -
  QYE79_RS17215 (QYE79_17215) dprA 3640269..3641357 (-) 1089 WP_014602326.1 DNA-processing protein DprA Machinery gene
  QYE79_RS17220 (QYE79_17220) tsaP 3641492..3642517 (-) 1026 WP_003097294.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  QYE79_RS17225 (QYE79_17225) def 3642656..3643162 (+) 507 WP_003097293.1 peptide deformylase -
  QYE79_RS17230 (QYE79_17230) fmt 3643218..3644162 (+) 945 WP_023095008.1 methionyl-tRNA formyltransferase -
  QYE79_RS17235 (QYE79_17235) rsmB 3644159..3645463 (+) 1305 WP_023108403.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QYE79_RS17240 (QYE79_17240) trkA 3645490..3646863 (+) 1374 WP_003111375.1 Trk system potassium transporter TrkA -
  QYE79_RS17245 (QYE79_17245) - 3647012..3647329 (+) 318 WP_003097288.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37586.01 Da        Isoelectric Point: 9.3358

>NTDB_id=777436 QYE79_RS17220 WP_003097294.1 3641492..3642517(-) (tsaP) [Pseudomonas aeruginosa strain PA942]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRIYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=777436 QYE79_RS17220 WP_003097294.1 3641492..3642517(-) (tsaP) [Pseudomonas aeruginosa strain PA942]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGCCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAATCCGCAGATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGCGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGCGCACCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGCATCTACGCC
CGCGGCAAGTTCGCCGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCGAAGACCAAGGA
AGTCCTCGGCATCAACGCCGACGACATCGGCGGCGGCGAGGTGGTAGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACCACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGCGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

36.512

100

0.393