Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   QYE79_RS06915 Genome accession   NZ_CP129200
Coordinates   1475424..1475753 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PA942     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1470424..1480753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE79_RS06900 (QYE79_06900) uvrB 1471811..1473823 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  QYE79_RS06905 (QYE79_06905) - 1474011..1475207 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  QYE79_RS06915 (QYE79_06915) comEA/comE1 1475424..1475753 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  QYE79_RS06920 (QYE79_06920) - 1475944..1477941 (-) 1998 WP_094954319.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  QYE79_RS06925 (QYE79_06925) - 1478508..1479628 (-) 1121 Protein_1368 IS3 family transposase -
  QYE79_RS06930 (QYE79_06930) - 1479706..1480725 (-) 1020 WP_003113413.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=777412 QYE79_RS06915 WP_003091430.1 1475424..1475753(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA942]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=777412 QYE79_RS06915 WP_003091430.1 1475424..1475753(-) (comEA/comE1) [Pseudomonas aeruginosa strain PA942]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385