Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   SNM_RS02410 Genome accession   NZ_AP025613
Coordinates   414918..415385 (+) Length   155 a.a.
NCBI ID   WP_244346975.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 409918..420385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS02385 (TthSNM66_04630) rnhA 411534..412034 (-) 501 WP_244346972.1 ribonuclease HI -
  SNM_RS02390 (TthSNM66_04640) - 412031..412417 (-) 387 WP_014510713.1 VOC family protein -
  SNM_RS02395 (TthSNM66_04650) - 412417..412704 (-) 288 WP_143586377.1 glutamine synthetase/cystathionine beta-lyase binding protein -
  SNM_RS02400 (TthSNM66_04660) - 412729..413292 (-) 564 WP_244346973.1 Uma2 family endonuclease -
  SNM_RS02405 (TthSNM66_04670) guaA 413292..414803 (-) 1512 WP_244346974.1 glutamine-hydrolyzing GMP synthase -
  SNM_RS02410 (TthSNM66_04680) luxS 414918..415385 (+) 468 WP_244346975.1 S-ribosylhomocysteine lyase Regulator
  SNM_RS02415 (TthSNM66_04690) mtnN 415382..416044 (+) 663 WP_024118679.1 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase -
  SNM_RS02420 (TthSNM66_04700) - 416059..416982 (+) 924 WP_244346976.1 ribose-phosphate pyrophosphokinase -
  SNM_RS02425 (TthSNM66_04710) uvrC 417033..418814 (-) 1782 WP_244346977.1 excinuclease ABC subunit UvrC -
  SNM_RS02430 (TthSNM66_04720) - 418829..419791 (+) 963 WP_244346978.1 membrane dipeptidase -
  SNM_RS02435 (TthSNM66_04730) - 419765..420178 (-) 414 WP_011173591.1 PaaI family thioesterase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16855.34 Da        Isoelectric Point: 6.4911

>NTDB_id=77741 SNM_RS02410 WP_244346975.1 414918..415385(+) (luxS) [Thermus thermophilus strain SNM6-6]
MAEVESFSLDHTKVKAPYVRLAGRKALAGGVVEKYDLRLAQPNREALPTGALHTLEHLLAGYLRDHLEGVIDLSPMGCRT
GFYLVVEGPVGEEKVLEAFAQALKDVLAHEGEVPGASFRECGNYRDHDLPGAKAWAEKVLKAGLRVQATVPLEAR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=77741 SNM_RS02410 WP_244346975.1 414918..415385(+) (luxS) [Thermus thermophilus strain SNM6-6]
ATGGCCGAGGTGGAGAGCTTCAGCCTGGACCACACCAAGGTCAAGGCCCCCTACGTGCGCCTGGCGGGGAGGAAGGCCCT
CGCGGGGGGCGTGGTGGAGAAGTACGACCTGAGGCTCGCCCAACCCAACCGGGAAGCCCTGCCCACGGGGGCCCTGCATA
CCCTGGAACACCTCCTGGCAGGCTACCTGCGGGACCACCTGGAAGGGGTTATTGACCTCTCCCCCATGGGTTGCCGCACG
GGGTTTTACCTGGTGGTGGAAGGCCCCGTGGGGGAGGAAAAGGTCCTCGAGGCCTTCGCCCAGGCCTTGAAGGACGTCCT
CGCCCACGAGGGGGAGGTCCCCGGGGCGAGCTTCAGGGAGTGCGGCAACTACCGGGACCATGACCTTCCTGGCGCCAAGG
CCTGGGCGGAGAAGGTGCTAAAGGCGGGGCTTAGGGTCCAGGCCACCGTCCCCCTGGAGGCGAGGTGA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(3-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

41.558

99.355

0.413

Multiple sequence alignment