Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PH197_RS01600 Genome accession   NZ_CP116456
Coordinates   320005..321795 (+) Length   596 a.a.
NCBI ID   WP_305016312.1    Uniprot ID   -
Organism   Leuconostoc lactis strain DMLL10     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 315005..326795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH197_RS01580 (PH197_01580) - 315107..316555 (+) 1449 WP_055308316.1 ABC transporter substrate-binding protein/permease -
  PH197_RS01585 (PH197_01585) - 316552..317304 (+) 753 WP_010001360.1 amino acid ABC transporter ATP-binding protein -
  PH197_RS01590 (PH197_01590) - 317408..318847 (+) 1440 WP_305016310.1 ABC transporter substrate-binding protein/permease -
  PH197_RS01595 (PH197_01595) - 318896..319924 (+) 1029 WP_305016311.1 competence protein CoiA -
  PH197_RS01600 (PH197_01600) pepF 320005..321795 (+) 1791 WP_305016312.1 oligoendopeptidase F Regulator
  PH197_RS01605 (PH197_01605) - 321868..322266 (+) 399 WP_010001365.1 cytidine deaminase -
  PH197_RS01610 (PH197_01610) - 322313..323236 (+) 924 WP_305016313.1 phosphoglycerate dehydrogenase -
  PH197_RS01615 (PH197_01615) - 323271..324245 (-) 975 WP_305016314.1 LacI family DNA-binding transcriptional regulator -
  PH197_RS01620 (PH197_01620) - 324427..325443 (+) 1017 WP_055308311.1 zinc-dependent alcohol dehydrogenase family protein -
  PH197_RS01625 (PH197_01625) - 325499..325882 (+) 384 WP_305016315.1 VOC family protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 67437.97 Da        Isoelectric Point: 4.3634

>NTDB_id=777396 PH197_RS01600 WP_305016312.1 320005..321795(+) (pepF) [Leuconostoc lactis strain DMLL10]
MAQLQRDEVPEELTWDLTSIFATDDEWETAYDAVHQGAQALKQFVGHVGDSAQTLQTALEADLDLERQLEKVYVYAHQIY
DQDTTNQKYAAFNSRAQALWSEVSEATAYFQPEVLNIPEETLTNYLKTAGLQPYQHLFDQILAQKPYTLPAEQEALLAGA
GDIFNASENTFGALDNSDMTFGDVHTETGEVVPLTNGLYSLLLESKSRELRQEAFETLYDSYIALQNTFASTLSSHVKGH
NYLAKVRHYRSAREAAILPHSLPTSVFETLRETVDANLPLLHRFVSLRKQVLAVDDVHSYDLYVPLVDEIDFDVTYDKAK
DIVLAALAPLGPDYIAVVKKAFDERWIDVVENKGKRTGAYSSGTYDTNPFILLNWQNNLNNVYTLAHEMGHSVHSYLTRQ
AQPYHYGDYPIFLAEIASTTNESLLTDYLLKTNDDPKFQAYVLNQYLDGFKGTVFRQTQFAEFEDWIHEQSAAGVALTAD
AMSTYYAALNQKYYGPDLFPDEEIAYEWARIPHFYYNYYVYQYATGEAAATTLADRILNQNGAEAYKDYLKAGASDYPLA
VIGQAGVDMTQADYLKEAFGVFEKRLDQLTDLLVHK

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=777396 PH197_RS01600 WP_305016312.1 320005..321795(+) (pepF) [Leuconostoc lactis strain DMLL10]
ATGGCACAACTACAACGCGATGAAGTACCTGAAGAGTTAACTTGGGATTTGACCTCCATTTTTGCAACCGATGACGAGTG
GGAAACAGCCTATGATGCCGTACATCAAGGGGCACAGGCGCTGAAGCAATTTGTGGGGCATGTTGGTGATTCAGCCCAAA
CGTTGCAAACAGCACTGGAAGCTGATCTTGATTTGGAACGTCAATTGGAAAAAGTCTACGTCTATGCGCACCAAATTTAT
GATCAAGATACGACGAATCAAAAATATGCTGCTTTTAATAGCCGTGCGCAAGCACTTTGGTCTGAAGTCAGTGAAGCAAC
AGCTTACTTCCAGCCAGAAGTGCTTAATATTCCAGAAGAAACGTTGACAAACTATTTGAAGACGGCAGGGTTGCAACCTT
ACCAACATTTATTTGATCAAATTCTGGCGCAAAAGCCTTACACTTTGCCAGCAGAACAGGAAGCACTGCTGGCTGGAGCT
GGGGATATTTTTAACGCTTCAGAAAACACTTTTGGTGCGTTAGATAACTCAGACATGACGTTTGGGGATGTCCATACTGA
AACGGGTGAAGTGGTGCCATTGACAAATGGCCTTTACAGTCTGTTGTTGGAATCTAAGTCACGTGAATTACGCCAAGAAG
CGTTTGAAACATTGTACGATAGTTACATTGCCTTGCAAAATACTTTCGCGTCAACGCTATCGTCACATGTTAAAGGTCAT
AATTATTTAGCTAAAGTGCGTCACTATCGCTCAGCACGGGAAGCAGCCATTCTACCACACAGCCTACCAACATCAGTGTT
TGAAACGTTGCGTGAAACGGTTGATGCCAATTTGCCACTGTTGCATCGTTTTGTATCACTCCGTAAGCAGGTTTTGGCCG
TGGACGATGTGCACTCATACGACCTCTACGTACCGTTGGTTGATGAGATTGATTTTGATGTCACGTATGATAAAGCCAAA
GACATTGTGTTAGCCGCTTTGGCACCATTAGGACCAGATTATATTGCCGTGGTTAAAAAGGCCTTTGACGAACGCTGGAT
TGATGTGGTGGAAAATAAGGGTAAGCGTACTGGTGCTTATTCGAGTGGCACCTATGACACGAACCCCTTTATTTTGTTAA
ATTGGCAAAATAACTTAAATAACGTTTACACTTTGGCCCATGAAATGGGACACTCGGTGCATTCTTATTTGACCCGTCAA
GCACAACCTTATCATTATGGTGATTACCCAATTTTCCTAGCTGAAATTGCGTCAACAACCAATGAAAGCCTACTCACGGA
TTATTTGTTAAAGACAAATGATGATCCAAAATTCCAAGCCTATGTGTTGAATCAATATCTTGATGGCTTTAAGGGCACGG
TGTTCCGACAGACCCAATTTGCAGAATTTGAAGATTGGATTCATGAACAAAGTGCAGCCGGGGTGGCGTTAACAGCTGAC
GCGATGAGTACGTACTATGCTGCATTGAATCAAAAGTATTATGGGCCAGACCTCTTCCCTGATGAAGAAATTGCGTATGA
ATGGGCGCGTATTCCACATTTCTACTACAATTATTATGTCTATCAATATGCCACTGGTGAAGCCGCAGCGACGACTTTGG
CTGATCGTATTTTGAACCAGAATGGGGCAGAAGCGTATAAAGATTACTTAAAGGCCGGTGCCTCAGACTATCCATTAGCC
GTTATCGGCCAAGCAGGGGTTGATATGACGCAAGCGGATTATTTGAAGGAAGCCTTTGGCGTGTTTGAGAAGCGTCTCGA
TCAGTTGACAGATTTGTTAGTTCACAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-580)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.13

99.161

0.527