Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   SNM_RS00590 Genome accession   NZ_AP025613
Coordinates   109733..110764 (-) Length   343 a.a.
NCBI ID   WP_244346849.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM6-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 104733..115764
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNM_RS00565 (TthSNM66_01080) pilD 105714..106784 (+) 1071 WP_244346834.1 A24 family peptidase Machinery gene
  SNM_RS00570 (TthSNM66_01090) - 106822..107325 (+) 504 WP_244346836.1 DUF2939 domain-containing protein -
  SNM_RS00575 (TthSNM66_01100) - 107339..108259 (+) 921 WP_011227819.1 nitroreductase family protein -
  SNM_RS00580 (TthSNM66_01110) - 108213..108989 (-) 777 WP_244346847.1 C40 family peptidase -
  SNM_RS00585 (TthSNM66_01120) - 108990..109748 (-) 759 WP_041443621.1 DUF721 domain-containing protein -
  SNM_RS00590 (TthSNM66_01130) recF 109733..110764 (-) 1032 WP_244346849.1 DNA replication and repair protein RecF Machinery gene
  SNM_RS00595 (TthSNM66_01140) - 110766..111938 (-) 1173 WP_244341085.1 MFS transporter -
  SNM_RS00600 (TthSNM66_01150) pstB 111948..112763 (-) 816 WP_011227814.1 phosphate ABC transporter ATP-binding protein PstB -
  SNM_RS00605 (TthSNM66_01160) pstA 112757..113971 (-) 1215 WP_018110995.1 phosphate ABC transporter permease PstA -
  SNM_RS00610 (TthSNM66_01170) pstC 113964..114866 (-) 903 WP_018110994.1 phosphate ABC transporter permease subunit PstC -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37804.69 Da        Isoelectric Point: 8.9580

>NTDB_id=77735 SNM_RS00590 WP_244346849.1 109733..110764(-) (recF) [Thermus thermophilus strain SNM6-6]
MRLLLFRQRNFRNLALEAYRPPLGLSALVGANAQGKTSLLLGIHLALGGEVPLGLADLVRFGEEEAWLHAEVETELGAYR
LEHRLGPGGREVLLNGKRVSLRALWELPGSVLVSPLDLEAVLGPKEERRAYLDRLIARFSRRYAALLSAYEKALRQRNAL
LKAGGEGLSAWDRELARYGDEIVALRRRFLRRFTPILREVHAALAAKEAGLRLEETAGEGVLRALEASRAEERERGQTLV
GPHRDDLVFLLEGRPAHRFASRGEAKTLALALRLAEHRLLGEHHGEPPLLLVDEWGEELDEARRRAVLAYAQALPQAILA
GLEAPPGVPVCSVVRGVVLCPGA

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=77735 SNM_RS00590 WP_244346849.1 109733..110764(-) (recF) [Thermus thermophilus strain SNM6-6]
ATGCGGCTTCTCCTCTTCCGGCAACGGAACTTCCGCAACCTGGCCCTGGAGGCCTACCGCCCCCCGCTGGGCCTTTCCGC
CCTGGTGGGGGCCAACGCCCAGGGGAAGACGAGCCTCCTCCTGGGGATCCACCTGGCCCTAGGGGGGGAGGTCCCCCTGG
GCCTTGCCGACCTCGTCCGCTTCGGGGAGGAGGAGGCCTGGCTCCACGCCGAGGTGGAGACGGAGCTCGGGGCCTACCGC
CTGGAGCACCGCCTGGGCCCCGGGGGGCGGGAGGTCCTCCTCAACGGGAAGCGGGTGAGCCTTCGGGCCCTTTGGGAGCT
TCCCGGCTCGGTCCTCGTCTCCCCTCTGGACCTCGAGGCGGTCCTCGGGCCCAAGGAGGAGCGGCGGGCCTACCTGGACC
GGCTCATCGCCCGCTTTTCCCGCCGCTACGCCGCCCTCCTTTCCGCGTACGAGAAGGCGCTGCGCCAGCGGAACGCCCTC
CTCAAGGCCGGGGGGGAGGGCCTTTCCGCCTGGGACCGGGAGCTCGCCCGCTACGGGGACGAGATCGTGGCCCTGAGGCG
CCGCTTCCTCCGGCGCTTCACCCCCATCCTGCGGGAGGTCCACGCCGCCCTCGCCGCCAAGGAGGCGGGGCTTCGCTTGG
AGGAGACCGCGGGGGAAGGGGTGCTCCGGGCCCTCGAGGCCAGCCGGGCCGAGGAGCGGGAGCGGGGCCAGACCCTGGTG
GGGCCCCACCGGGACGACCTGGTCTTCCTCCTGGAGGGGCGGCCCGCCCACCGGTTCGCCAGCCGCGGGGAGGCCAAGAC
CCTGGCCCTGGCCCTGCGCCTCGCCGAGCACCGCCTCCTCGGCGAGCACCACGGCGAGCCCCCCCTCCTCCTCGTGGACG
AGTGGGGAGAGGAGCTGGACGAGGCCCGCAGGCGGGCCGTCCTCGCCTACGCCCAGGCCCTGCCCCAGGCCATCCTGGCG
GGGCTGGAAGCCCCCCCGGGGGTGCCGGTATGCTCGGTGGTACGAGGGGTGGTCCTGTGCCCTGGCGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.543

98.251

0.408