Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PH545_RS01345 Genome accession   NZ_CP116414
Coordinates   253426..253944 (+) Length   172 a.a.
NCBI ID   WP_005448429.1    Uniprot ID   A0A9X3RVD3
Organism   Vibrio harveyi strain K2014767     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 248426..258944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PH545_RS01335 (PH545_01335) gshA 251147..252715 (+) 1569 WP_289880829.1 glutamate--cysteine ligase -
  PH545_RS01340 (PH545_01340) - 252777..253340 (+) 564 WP_005448430.1 hypothetical protein -
  PH545_RS01345 (PH545_01345) luxS 253426..253944 (+) 519 WP_005448429.1 S-ribosylhomocysteine lyase Regulator
  PH545_RS01350 (PH545_01350) - 254036..255310 (-) 1275 WP_005446238.1 CNNM domain-containing protein -
  PH545_RS01355 (PH545_01355) - 255465..256259 (-) 795 WP_005446240.1 inner membrane protein YpjD -
  PH545_RS01360 (PH545_01360) ffh 256473..257855 (+) 1383 WP_005446242.1 signal recognition particle protein -
  PH545_RS01365 (PH545_01365) rpsP 258066..258314 (+) 249 WP_289880836.1 30S ribosomal protein S16 -
  PH545_RS01370 (PH545_01370) rimM 258343..258891 (+) 549 WP_005446245.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19054.80 Da        Isoelectric Point: 4.8563

>NTDB_id=777274 PH545_RS01345 WP_005448429.1 253426..253944(+) (luxS) [Vibrio harveyi strain K2014767]
MPLLDSFTVDHTRMHAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWVAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDDLA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=777274 PH545_RS01345 WP_005448429.1 253426..253944(+) (luxS) [Vibrio harveyi strain K2014767]
ATGCCTTTATTAGACAGTTTTACCGTGGACCACACACGTATGCATGCGCCAGCAGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAGGGAGACACCATCACAGTATTTGACTTACGTTTTACTGCACCGAACAAAGACATCCTTTCTGAGAAGGGAATTC
ACACTTTAGAGCATTTGTACGCTGGCTTTATGCGCAACCACTTAAACGGTGATAGCGTTGAGATCATCGATATCTCACCA
ATGGGTTGCCGTACCGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCGGATGCTTGGGTTGCAGC
AATGGAAGACGTATTGAAAGTAGAAAGTCAAAACAAGATCCCTGAGCTGAATGAATACCAATGTGGTACAGCAGCAATGC
ACTCTTTAGATGAGGCAAAGCAAATCGCGAAAAACATTCTAGAAGCGGGCGTTGCAGTCAATAAGAATGATGATTTGGCA
CTGCCAGAATCTATGCTGAAAGAGTTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.965

99.419

0.855