Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PL330_RS14720 Genome accession   NZ_CP116411
Coordinates   3050221..3050850 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HH45     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3045221..3055850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL330_RS14705 (PL330_14705) helD 3045463..3047517 (-) 2055 WP_001315388.1 DNA helicase IV -
  PL330_RS14710 (PL330_14710) yccF 3047640..3048086 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PL330_RS14715 (PL330_14715) yccS 3048096..3050258 (+) 2163 WP_000875044.1 YccS family putative transporter -
  PL330_RS14720 (PL330_14720) sxy/tfoX 3050221..3050850 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PL330_RS14725 (PL330_14725) sulA 3051069..3051578 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PL330_RS14730 (PL330_14730) ompA 3051935..3052987 (+) 1053 WP_000750419.1 porin OmpA -
  PL330_RS14735 (PL330_14735) matP 3053062..3053514 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  PL330_RS14740 (PL330_14740) ycbZ 3053700..3055460 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=777244 PL330_RS14720 WP_000839153.1 3050221..3050850(-) (sxy/tfoX) [Escherichia coli strain HH45]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=777244 PL330_RS14720 WP_000839153.1 3050221..3050850(-) (sxy/tfoX) [Escherichia coli strain HH45]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1