Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   QRN89_RS11035 Genome accession   NZ_CP129137
Coordinates   2471981..2473714 (+) Length   577 a.a.
NCBI ID   WP_290349179.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS CB01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 2466981..2478714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRN89_RS11025 (QRN89_11025) - 2469529..2469828 (+) 300 WP_290349177.1 YtxH domain-containing protein -
  QRN89_RS11030 (QRN89_11030) - 2470283..2471722 (+) 1440 WP_290349178.1 FGGY family carbohydrate kinase -
  QRN89_RS11035 (QRN89_11035) rcrP 2471981..2473714 (+) 1734 WP_290349179.1 ABC transporter ATP-binding protein Regulator
  QRN89_RS11040 (QRN89_11040) rcrQ 2473714..2475639 (+) 1926 WP_290349180.1 ABC transporter ATP-binding protein Regulator
  QRN89_RS11045 (QRN89_11045) - 2475694..2476962 (-) 1269 WP_290349181.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62442.41 Da        Isoelectric Point: 5.2439

>NTDB_id=777243 QRN89_RS11035 WP_290349179.1 2471981..2473714(+) (rcrP) [Streptomyces sp. HUAS CB01]
MLIRLLRTFLRPHRQAITLLVTLQLLQTSATLYLPTLNADIIDNGVVQGDTGYILTFGALMIGVSVVQVVCNIGAVYYGA
RTAAALGRDVRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVLALSLDVPLSAV
LLAVVPVLGISVSLIVKRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDDYEEQRFRGSNTELTDVSMATGRLMAL
MFPIVMTVVNVSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PAAPVRETARHGHLEVRGADFRYPGAEEPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELDPVLMARTVGLVPQKPYLFSGTVATNLRYGNPDATDEELWRALEVAQAADFVRELDGGLDAPVAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALALETAESTVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAGN
DTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=777243 QRN89_RS11035 WP_290349179.1 2471981..2473714(+) (rcrP) [Streptomyces sp. HUAS CB01]
GTGCTCATACGACTCCTCCGGACGTTCCTGCGTCCCCACCGGCAGGCGATCACCCTGCTGGTGACGCTGCAACTGCTCCA
GACCAGCGCCACGCTCTATCTGCCCACACTGAACGCGGACATCATTGACAACGGTGTCGTCCAGGGTGACACGGGATACA
TCCTGACGTTCGGCGCGCTGATGATCGGCGTCAGCGTCGTCCAGGTCGTGTGCAACATCGGGGCCGTCTACTACGGCGCG
CGGACCGCCGCCGCGCTCGGACGCGACGTGCGCGCCGCCGTGTTCGACCGCGTCCAGTCGTTCTCGGCGCGTGAGGTGGG
GCACTTCGGCGCCCCGTCCCTCATCACCCGTACGACCAACGACGTCCAACAGGTCCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTCGGCGGCATCGTGCTCGCCCTCTCCCTGGACGTCCCGCTGTCGGCGGTG
CTGCTCGCGGTCGTACCGGTACTCGGCATCTCCGTGTCACTGATCGTCAAGCGGATGCGGCCGCTGTTCCGGACCATGCA
GGAGCGGCTCGACACGGTCAACCGGGTCCTGCGGGAGCAGATCACCGGCAACCGCGTGATCAGGGCCTTCGTGAAGGACG
ACTACGAGGAGCAGCGCTTCCGCGGGTCGAACACCGAGTTGACGGACGTGTCGATGGCGACGGGCCGGCTGATGGCGCTG
ATGTTCCCCATCGTGATGACCGTCGTGAACGTGTCGAGCATCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTCACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGGCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCCCGCGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTCCTGGCCACCGAGTCCAGTGTCGTGCCC
CCGGCCGCGCCGGTGCGGGAGACGGCGCGCCACGGCCATCTCGAGGTCCGCGGCGCCGACTTCCGCTACCCGGGCGCGGA
GGAACCCGTGCTGCGCGGGGTGGACCTGGTGGCCCGGCCCGGTGAGACGACCGCGGTCATCGGCTCGACGGGCAGCGGCA
AGTCGACGCTGCTGGGGCTGGTTCCGCGGCTGTTCGACGTCACGGGCGGCGAGGTCCTCGTCGACGGGGTGGACGTACGG
GAACTGGACCCGGTGCTGATGGCGCGCACCGTCGGACTCGTGCCGCAGAAGCCGTACCTCTTCTCGGGAACGGTCGCGAC
GAACCTCCGCTACGGGAACCCCGACGCGACCGACGAGGAGCTGTGGCGGGCGCTGGAGGTCGCGCAGGCCGCCGACTTCG
TGCGCGAACTCGACGGCGGGCTCGACGCGCCCGTCGCCCAGGGCGGTACCAACGTGTCGGGCGGCCAGCGGCAGCGGCTC
GCGATCGCGCGCACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGCGGTGCGCTGGCGCTGGAGACGGCCGAGTCGACGGTGGTGATCGTCGCGCAGCGGGTGTCGACCATCC
GCGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACGGGCCGCCATCACGAACTGATGGCGGGGAAC
GACACGTACCGGGAGATCGTCCTCTCCCAGCTGACCGAGGCGGAGGCTGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.455

98.96

0.4