Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   PL329_RS16750 Genome accession   NZ_CP116409
Coordinates   3373738..3374367 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HH97     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3368738..3379367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PL329_RS16735 (PL329_16735) helD 3368980..3371034 (-) 2055 WP_000420536.1 DNA helicase IV -
  PL329_RS16740 (PL329_16740) yccF 3371157..3371603 (+) 447 WP_001261235.1 YccF domain-containing protein -
  PL329_RS16745 (PL329_16745) yccS 3371613..3373775 (+) 2163 WP_271710974.1 YccS family putative transporter -
  PL329_RS16750 (PL329_16750) sxy/tfoX 3373738..3374367 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  PL329_RS16755 (PL329_16755) sulA 3374586..3375095 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  PL329_RS16760 (PL329_16760) ompA 3375452..3376492 (+) 1041 WP_000750416.1 porin OmpA -
  PL329_RS16765 (PL329_16765) matP 3376568..3377020 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  PL329_RS16770 (PL329_16770) ycbZ 3377206..3378966 (+) 1761 WP_000156518.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=777227 PL329_RS16750 WP_000839153.1 3373738..3374367(-) (sxy/tfoX) [Escherichia coli strain HH97]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=777227 PL329_RS16750 WP_000839153.1 3373738..3374367(-) (sxy/tfoX) [Escherichia coli strain HH97]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCAAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1