Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   PFZ59_RS07040 Genome accession   NZ_CP116393
Coordinates   1380773..1381576 (+) Length   267 a.a.
NCBI ID   WP_277696693.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   require for competence development (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1381686..1382690 1380773..1381576 flank 110


Gene organization within MGE regions


Location: 1380773..1382690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS07040 (PFZ59_07040) vicX 1380773..1381576 (+) 804 WP_277696693.1 MBL fold metallo-hydrolase Regulator
  PFZ59_RS07045 (PFZ59_07045) - 1381686..1382690 (+) 1005 WP_277696681.1 IS5 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29645.73 Da        Isoelectric Point: 5.7755

>NTDB_id=777104 PFZ59_RS07040 WP_277696693.1 1380773..1381576(+) (vicX) [Streptococcus suis strain SS/UPM/MY/F001]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKISSLLAEIDRKPEDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDIEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGVDFQVYDTSPDTATPLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=777104 PFZ59_RS07040 WP_277696693.1 1380773..1381576(+) (vicX) [Streptococcus suis strain SS/UPM/MY/F001]
ATGATCGGAAAAGGTTTTAATTATAGTATTTTAGCTTCGGGGTCCAGCGGGAATTGTTTTTACCTAGAAACAGATAAAAA
GAAAATCTTAGTGGATGCTGGCTTATCAGGGAAAAAGATTAGCAGTCTTTTGGCGGAAATTGATCGAAAGCCTGAGGATA
TTGATGCTATCCTGGTAACGCATGAACATAGCGATCACATCCATGGTATCGGTGTTTTAGCACGTAAGTACGGCATGGAC
ATTTATGCCAATGAATTGACCTGGCAGGCTATGGAGAGCAAATTGGGCAAGATTGATGTGGCTCAAAAACATATCTTCGA
ATTGGGTGCTATGAAGACTTTTGGCGACCTAGATATTGAGTCCTTTGGAGTTAGTCACGATGCTGCATGTCCGCAATTTT
ACCGTTTTATGAAGGATGACAAATCCTTTGTTATGTTGACGGATACAGGCTATGTCAGTGACCGCATGGTTGGAATTGTA
GAAAATGCCGATGCTTATTTGATTGAATCGAACCATGATATTGAAATTTTGCGCTCGGGTTCATATTCATGGAATTTGAA
GCAACGGATTCTATCCGATAAGGGCCATCTTTGTAACGAAGACGGTGCTGATGCCATGATTCGCTCGTTGGGAAATCGGA
CCAAAAAGATTTACCTAGGGCATTTATCAAAGGAAAACAATATCAAGGAATTGGCTCACATGACCATGGTTAATCAGTTG
GCTCAGGCTGATTTAGGAGTTGGAGTGGATTTCCAAGTCTATGACACATCGCCAGATACAGCGACTCCCTTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.528

100

0.775