Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PFZ59_RS06220 Genome accession   NZ_CP116393
Coordinates   1212098..1213756 (+) Length   552 a.a.
NCBI ID   WP_277697741.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1207098..1218756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS06185 (PFZ59_06185) xerD 1207519..1208250 (+) 732 WP_105105063.1 site-specific tyrosine recombinase XerD -
  PFZ59_RS06190 (PFZ59_06190) - 1208250..1208969 (+) 720 WP_277697740.1 segregation/condensation protein A -
  PFZ59_RS06195 (PFZ59_06195) scpB 1208953..1209522 (+) 570 WP_002939233.1 SMC-Scp complex subunit ScpB -
  PFZ59_RS06200 (PFZ59_06200) - 1209512..1210243 (+) 732 WP_012027615.1 pseudouridine synthase -
  PFZ59_RS06205 (PFZ59_06205) yidD 1210243..1210482 (+) 240 WP_024406654.1 membrane protein insertion efficiency factor YidD -
  PFZ59_RS06210 (PFZ59_06210) - 1211162..1211491 (+) 330 WP_277696732.1 IS630 transposase-related protein -
  PFZ59_RS06215 (PFZ59_06215) - 1211565..1212011 (+) 447 WP_277697787.1 transposase -
  PFZ59_RS06220 (PFZ59_06220) oppA 1212098..1213756 (+) 1659 WP_277697741.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PFZ59_RS06225 (PFZ59_06225) - 1213905..1214147 (+) 243 WP_275600822.1 hypothetical protein -
  PFZ59_RS06230 (PFZ59_06230) - 1214144..1214689 (+) 546 WP_014736238.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  PFZ59_RS06235 (PFZ59_06235) - 1215013..1215570 (+) 558 WP_024388277.1 ECF transporter S component -
  PFZ59_RS06240 (PFZ59_06240) - 1215595..1216248 (+) 654 WP_277697742.1 phosphatase PAP2 family protein -
  PFZ59_RS06245 (PFZ59_06245) - 1216294..1217345 (-) 1052 Protein_1179 IS630 family transposase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 61367.46 Da        Isoelectric Point: 4.2192

>NTDB_id=777097 PFZ59_RS06220 WP_277697741.1 1212098..1213756(+) (oppA) [Streptococcus suis strain SS/UPM/MY/F001]
MTNEGQTIEGGSLKYALVASAPSTGILIDELLQMAVDSTFADMVDISMFGYDSARKLDDSGLAKAEFDVDAKTVTVSLTG
KDYKWSDGQAFTIDDYIFTIEQLASPDYTGVRADTTYTNIIGFEEFQAGTASEISGVKKVDDYTVVLSVKDMSPSMKYAG
GGVPYLVMPKHIFKDIAVKDWESSEYSRTAKVVGMGPYKVKEIVNGESVTYVPNEYYFKGKVKLDSYRIDIVSPDTIVAE
MRAGNYDIADMPTDQYESYKDLSNITLLGSLDGIYNYIGFNLGKYDDASGKNVTNPNAKMNNVKLRQAMGYALDNAMIGE
KLYNGLYHPTNSLIISFFGDVHDSELAGYSYDPEKAKKLLDEAGYKDVDGDGMREDADGKSLTISVAAQKSTETQETMVQ
QYLTWWKEIGLNVELYTGRTIEYNTFYESIAANDEGIDVYLAAWIAGLDPDPTSLWGPEAMYNYTRFVSDEKTALLNKIT
SAESFDEQKNIENYKAWQEYAFEQAFAIPTFERESITAVNKRVKYYDVYIGSDSKSGHENLELTAEKGIAAE

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=777097 PFZ59_RS06220 WP_277697741.1 1212098..1213756(+) (oppA) [Streptococcus suis strain SS/UPM/MY/F001]
GTGACAAACGAAGGACAAACTATTGAAGGCGGAAGTCTCAAATATGCCTTGGTAGCTTCGGCGCCTTCGACCGGTATCTT
AATTGATGAATTATTGCAAATGGCGGTAGACTCAACCTTTGCAGACATGGTTGATATTTCTATGTTTGGATATGATTCAG
CTCGTAAGCTAGACGATTCAGGCCTTGCTAAGGCAGAGTTTGATGTAGACGCAAAGACAGTTACCGTTAGTTTGACAGGC
AAGGACTATAAGTGGTCCGATGGGCAAGCCTTCACCATTGATGATTATATTTTCACAATCGAACAACTAGCTAGTCCAGA
CTATACAGGGGTTCGTGCAGATACTACCTATACAAATATCATTGGCTTTGAAGAATTTCAGGCTGGAACAGCAAGTGAAA
TTTCAGGTGTTAAGAAGGTTGATGATTATACGGTTGTCCTCTCAGTGAAAGACATGTCTCCATCCATGAAGTATGCTGGT
GGTGGAGTACCTTATTTAGTCATGCCGAAACACATTTTTAAAGACATTGCAGTCAAAGATTGGGAATCAAGTGAGTATTC
TCGTACGGCAAAAGTTGTCGGTATGGGCCCTTATAAGGTCAAGGAAATTGTCAATGGCGAGTCGGTGACCTATGTACCAA
ATGAGTACTACTTTAAAGGGAAAGTTAAGCTAGATAGTTACAGGATTGATATTGTTTCACCAGATACGATTGTTGCAGAA
ATGAGAGCAGGCAATTATGATATTGCTGATATGCCAACAGACCAGTACGAATCTTACAAGGACTTATCTAATATTACTTT
ACTAGGTAGTCTGGATGGTATTTACAATTATATTGGCTTTAATCTTGGTAAGTACGATGATGCTAGTGGTAAGAATGTGA
CCAATCCTAATGCTAAGATGAATAATGTTAAATTGCGTCAAGCAATGGGATATGCATTGGACAATGCGATGATTGGAGAG
AAATTATATAACGGCTTGTATCACCCGACAAACTCACTAATTATCTCTTTCTTTGGAGATGTTCATGATTCAGAATTAGC
TGGCTATAGTTATGATCCTGAAAAGGCTAAAAAACTTCTCGATGAGGCAGGATATAAAGATGTAGATGGAGACGGTATGC
GTGAAGATGCTGATGGAAAATCGCTTACCATCAGTGTTGCAGCACAGAAATCAACCGAAACGCAAGAAACTATGGTACAG
CAATACCTTACATGGTGGAAAGAAATTGGTTTGAATGTGGAACTCTATACAGGAAGAACTATTGAGTACAATACTTTCTA
TGAATCAATTGCTGCCAATGATGAGGGGATTGATGTCTATCTTGCAGCTTGGATTGCTGGCCTAGATCCAGACCCGACAT
CATTGTGGGGACCTGAAGCTATGTACAACTATACTCGCTTCGTTTCAGATGAAAAAACAGCACTTTTAAATAAAATTACC
TCTGCTGAGTCATTTGACGAACAAAAAAATATTGAAAACTACAAAGCTTGGCAAGAATATGCCTTCGAACAAGCCTTTGC
AATTCCAACCTTTGAACGTGAAAGTATTACTGCTGTTAACAAACGCGTTAAATATTACGACGTTTATATCGGTTCGGACA
GTAAATCAGGTCATGAAAATCTTGAGTTAACTGCGGAAAAAGGGATTGCAGCAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(61-456)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

67.027

100

0.674