Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   PFZ59_RS05335 Genome accession   NZ_CP116393
Coordinates   1035687..1036421 (+) Length   244 a.a.
NCBI ID   WP_277697670.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1030687..1041421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS05305 (PFZ59_05305) - 1030882..1032546 (+) 1665 WP_208580904.1 DAK2 domain-containing protein -
  PFZ59_RS05310 (PFZ59_05310) tsaE 1032647..1033087 (+) 441 WP_024376437.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  PFZ59_RS05315 (PFZ59_05315) - 1033080..1033607 (+) 528 WP_277697667.1 GNAT family N-acetyltransferase -
  PFZ59_RS05320 (PFZ59_05320) - 1033604..1034797 (+) 1194 WP_277697668.1 LCP family protein -
  PFZ59_RS05325 (PFZ59_05325) - 1034907..1035209 (-) 303 WP_277697669.1 chemotaxis protein -
  PFZ59_RS05330 (PFZ59_05330) - 1035211..1035624 (-) 414 WP_208580900.1 HIT family protein -
  PFZ59_RS05335 (PFZ59_05335) pptA 1035687..1036421 (+) 735 WP_277697670.1 ABC transporter ATP-binding protein Regulator
  PFZ59_RS05340 (PFZ59_05340) - 1036418..1037458 (+) 1041 WP_277697671.1 ABC transporter permease -
  PFZ59_RS05345 (PFZ59_05345) - 1037508..1038302 (+) 795 WP_277697672.1 phosphotransferase family protein -
  PFZ59_RS05350 (PFZ59_05350) trmB 1038299..1038937 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  PFZ59_RS05355 (PFZ59_05355) - 1039012..1039965 (-) 954 WP_277697289.1 IS30 family transposase -
  PFZ59_RS05360 (PFZ59_05360) rimP 1040481..1040951 (+) 471 WP_277697673.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26798.09 Da        Isoelectric Point: 4.3606

>NTDB_id=777094 PFZ59_RS05335 WP_277697670.1 1035687..1036421(+) (pptA) [Streptococcus suis strain SS/UPM/MY/F001]
MLEVKNVTGGYVNIPVLKDVSFTVEDGQLVGLIGLNGAGKSTTIKEIIGLLTPYQGQIAIDGLTLLQGAENYRKKIGVIP
ETPSLYEELTLKEHLEVVAMAYDLSWEQAWGRVEHLLKLFRLDEKLDWFPVNFSKGMKQKVMIICAFMVEPTLLIVDEPF
LGLDPVAISDLIALLEEEKSKGTSILMSTHVLDSAEKMCDSFVILHQGQVRATGNLEELQSAFGMDGASLNEIYLALTQE
GVAG

Nucleotide


Download         Length: 735 bp        

>NTDB_id=777094 PFZ59_RS05335 WP_277697670.1 1035687..1036421(+) (pptA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTTAGAAGTAAAAAATGTAACTGGAGGGTATGTCAATATCCCGGTTTTGAAAGATGTATCTTTTACGGTTGAGGATGG
TCAATTAGTTGGTCTAATTGGCTTAAATGGTGCAGGGAAATCAACGACTATTAAGGAAATTATCGGTCTTTTGACACCTT
ATCAAGGACAGATTGCAATTGACGGCCTAACTTTGCTACAAGGGGCTGAAAATTATCGGAAGAAGATTGGGGTTATTCCT
GAAACACCAAGTTTGTATGAAGAACTAACCCTCAAAGAGCACTTGGAAGTGGTAGCAATGGCCTATGATTTATCCTGGGA
GCAAGCTTGGGGACGTGTTGAGCACTTGTTAAAACTGTTTCGCTTGGATGAGAAATTGGACTGGTTTCCTGTCAATTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATTTGTGCTTTTATGGTGGAGCCGACTCTGTTGATTGTTGATGAGCCTTTT
CTGGGTTTAGACCCTGTGGCTATCTCTGATTTAATCGCTCTTTTGGAGGAAGAAAAATCTAAGGGCACTTCCATTCTCAT
GTCCACTCACGTTCTTGACTCAGCTGAGAAAATGTGCGACTCTTTTGTGATTTTACATCAGGGACAGGTCCGTGCAACTG
GAAATTTGGAGGAGCTACAAAGCGCATTTGGTATGGATGGTGCAAGTCTGAATGAAATTTATCTGGCCTTGACGCAAGAA
GGAGTGGCTGGATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

74.895

97.951

0.734
  pptA Streptococcus thermophilus LMD-9

73.222

97.951

0.717