Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   PFZ59_RS05270 Genome accession   NZ_CP116393
Coordinates   1022988..1024778 (+) Length   596 a.a.
NCBI ID   WP_208580906.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1017988..1029778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS05255 (PFZ59_05255) sufU 1019048..1019488 (+) 441 WP_208580912.1 Fe-S cluster assembly sulfur transfer protein SufU -
  PFZ59_RS05260 (PFZ59_05260) sufB 1019793..1021208 (+) 1416 WP_208580910.1 Fe-S cluster assembly protein SufB -
  PFZ59_RS05265 (PFZ59_05265) pbp3 1021534..1022775 (-) 1242 WP_277697664.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  PFZ59_RS05270 (PFZ59_05270) oppA 1022988..1024778 (+) 1791 WP_208580906.1 oligopeptide ABC transporter substrate-binding protein Regulator
  PFZ59_RS05275 (PFZ59_05275) - 1025155..1026153 (+) 999 WP_277697665.1 ABC transporter ATP-binding protein -
  PFZ59_RS05280 (PFZ59_05280) - 1026156..1027097 (+) 942 WP_277697666.1 ATP-binding cassette domain-containing protein -
  PFZ59_RS05285 (PFZ59_05285) opp4B 1027099..1028055 (+) 957 WP_024389682.1 oligopeptide ABC transporter permease -
  PFZ59_RS05290 (PFZ59_05290) - 1028069..1028971 (+) 903 WP_002942329.1 ABC transporter permease -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65662.36 Da        Isoelectric Point: 4.3956

>NTDB_id=777093 PFZ59_RS05270 WP_208580906.1 1022988..1024778(+) (oppA) [Streptococcus suis strain SS/UPM/MY/F001]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVSDAQLKYAFVSPTTSSGLLIDELTENTTDST
FGGMVDISLFGYDGDRKLDDSGLAKAEFDVEGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IEGMKEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNLGKYDESAEKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLDEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEINTFYEAVQANDPAID
MYAGGWSTGYDPNPTGTWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESIVA
LNKRVKNYDSNYGSASGKGIALENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=777093 PFZ59_RS05270 WP_208580906.1 1022988..1024778(+) (oppA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGACGGAACAGCAGTGTCTGACGCTCAGT
TGAAATATGCGTTTGTATCACCAACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAATACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCACTGTTCGGTTATGATGGAGATCGTAAGTTGGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAGAAGGTAAGAAAATCACAGTTAGCTTGACAGGTAAGGACTACAAGTGGTCAGATGGTGAGCCATTCACAA
TCAACGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGATGATAAATTCTTGAAC
ATTGAAGGTATGAAAGAATTCGTTGCTGGAACAGCTTCTGACATCTCTGGTCTTAAGAAAATTGATGACTACACAGTGGA
ATTGACTGTAAAAGAAATGTCACCTTCAATGATGTATGCGGGTGGTGATGTCCCAGCCTATATCCAACCAGAACACATCT
ATAAAGACATCCCTGTTGCAGACTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTACGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
TTCATTGAAGATTGACATCGTATCTCCAGATACAATCGTTTCTGAGATGAAAGCTGGTAACTATGACATCGCAGATATGC
CAGTTGATCAGTTGGATTCTTATAAAGATGCATCTAACTTGAATATCGTTGGTTCTTTGGATTCAGCTTATGAATATATC
TCATTCAACCTTGGTAAATATGACGAATCTGCTGAGAAGAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACCAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGTGATATTCATGATTCAGAGTTGGAAGGTTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGATGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGCAAAGACGGTAAGGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACTGAAGCTAACGAAGCGCTTGTACAACAGTACATTGCTTGGTGGAAAGAAGTCGGCTTGA
ACGTTGAATTGTACACAGGTCGTACAGTTGAAATCAATACATTCTACGAAGCTGTTCAAGCAAATGATCCTGCTATCGAT
ATGTACGCTGGTGGTTGGTCAACAGGTTATGATCCAAACCCAACAGGTACTTGGGGTCCTATCGCTGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAACACTAAATTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AAAACTACAAGGCATGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCTACATTTGAATCTGAGTCAATTGTAGCA
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGTTCAGCTTCAGGTAAAGGTATCGCTCTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

92.45

100

0.925