Detailed information NTG0777089

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: PFZ59_RS03690
• Genome accession: NZ_CP116393
• Coordinates: 705897..707264 (+)
• Length: 455 a.a.
• NCBI ID: WP_277697776.1
• Uniprot ID: -
• Organism: Streptococcus suis strain SS/UPM/MY/F001
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	708115..709119	705897..707264	flank	851

Gene organization within MGE regions

Location: 705897..709119

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PFZ59_RS03690 (PFZ59_03690)	radA	705897..707264 (+)	1368	WP_277697776.1	DNA repair protein RadA	Machinery gene
PFZ59_RS03695 (PFZ59_03695)	-	707388..707882 (+)	495	WP_208581466.1	carbonic anhydrase	-
PFZ59_RS03700 (PFZ59_03700)	-	708115..709119 (-)	1005	WP_277696681.1	IS5 family transposase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49841.35 Da
• Isoelectric Point: 6.1904

>NTDB_id=777089 PFZ59_RS03690 WP_277697776.1 705897..707264(+) (radA) [Streptococcus suis strain SS/UPM/MY/F001]
MIIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVEVAEVKNERVSLTGEKTRPMKLNEVSSIQVARTKTNMEEFN
RVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRTE
IEKIQPAFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQIAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEG
ERQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGN
AKRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLEEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGE
IRRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEITVIGVTTIGEVLQKVFN

Nucleotide

• Length: 1368 bp

>NTDB_id=777089 PFZ59_RS03690 WP_277697776.1 705897..707264(+) (radA) [Streptococcus suis strain SS/UPM/MY/F001]
ATCATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAATCCTGCGAGTACCACTCACCCAAGTATCTGGGCCGCTGCCC
CAACTGTGGCTCCTGGTCTAGCTTTGTCGAGGAAGTGGAAGTCGCTGAAGTCAAGAACGAGCGGGTCAGCCTGACAGGTG
AGAAGACCCGTCCCATGAAACTCAATGAAGTTTCCTCCATTCAAGTGGCCCGCACCAAGACCAACATGGAAGAGTTCAAC
CGTGTCCTCGGTGGTGGCGTGGTGCCGGGCAGCCTAGTTCTCATTGGAGGCGATCCAGGAATCGGGAAATCCACCCTGCT
TTTACAGGTATCTACCCAGCTTTCTACTATTGGCACGGTCCTCTATGTGTCGGGGGAAGAGTCTGCCCAGCAGATTAAGT
TGCGGGCGGAGCGTTTGGGTGACATCGACAGCGAGTTCTATCTCTATGCGGAGACCAATATGCAGAGCATTCGGACCGAG
ATTGAGAAGATTCAGCCAGCTTTCCTGATTATCGACTCTATCCAGACCATTATGAGCCCTGACATTTCTAGCGTGCAAGG
CTCTGTCAGTCAGGTCCGTGAAGTGACCAATGAACTCATGCAGATTGCCAAGACCAACAACATCGCAACCTTTATCGTCG
GCCACATGACCAAGGAAGGAACCCTGGCTGGACCGCGGACCCTGGAGCACATGGTGGACACCGTTCTCTATTTTGAGGGC
GAGCGGCAGCACACCTTCCGTATCTTGCGGGCGGTCAAAAACCGCTTTGGCTCCACCAACGAAATCGGCATTTTTGAAAT
GCAGTCGCAGGGTTTGGTCGAAGTCCTCAATCCTAGCGAGGTCTTTCTAGAAGAGCGTCTGGACGGGGCGACAGGCTCTG
CTATTGTCGTGACCATGGAGGGCACCCGCCCTATCCTTGCCGAAGTGCAGGCTCTGGTGACCCCGACCATGTTTGGCAAT
GCCAAGCGGACCACGACAGGCTTAGATTTCAACCGTGCCAGCTTGATTATGGCGGTTTTGGAAAAACGGGCAGGCCTGCT
CCTCCAAAACCAAGATGCCTACCTCAAGTCAGCAGGCGGTGTCAAACTGGAAGAGCCAGCTATTGACCTAGCGGTCGCAG
TTGCCCTCGCCTCCAGTTACAAGGATAAGCCAACCAACCCACAAGAGTGCTTTATAGGCGAAATCGGTCTGACAGGGGAA
ATCCGCCGCGTCAATCGGATTGAACAACGGATTAACGAAGCCGCCAAATTGGGCTTTACAAAGGTCTATGCCCCCAAAAA
TTCCCTGACAGGTATCAAGGTGCCCAAGGAAATCACGGTTATCGGCGTGACCACCATTGGCGAAGTCTTACAGAAAGTAT
TCAACTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (64-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (10-37)

• Subunit ChlI of Mg-chelatase (ChlI) (360-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus mitis NCTC 12261	91.15	99.341	0.905
radA	Streptococcus pneumoniae Rx1	90.929	99.341	0.903
radA	Streptococcus pneumoniae D39	90.929	99.341	0.903
radA	Streptococcus pneumoniae R6	90.929	99.341	0.903
radA	Streptococcus pneumoniae TIGR4	90.929	99.341	0.903
radA	Streptococcus mitis SK321	90.708	99.341	0.901
radA	Bacillus subtilis subsp. subtilis str. 168	62.472	99.56	0.622