Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   PFZ59_RS01535 Genome accession   NZ_CP116393
Coordinates   312308..313021 (-) Length   237 a.a.
NCBI ID   WP_208582205.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 307308..318021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS01510 (PFZ59_01510) trxA 307519..307833 (-) 315 WP_012775426.1 thioredoxin -
  PFZ59_RS01515 (PFZ59_01515) - 308043..308696 (-) 654 WP_208582202.1 GNAT family N-acetyltransferase -
  PFZ59_RS01520 (PFZ59_01520) - 308720..311053 (-) 2334 WP_277697354.1 endonuclease MutS2 -
  PFZ59_RS01525 (PFZ59_01525) - 311394..311942 (-) 549 WP_002935945.1 CvpA family protein -
  PFZ59_RS01530 (PFZ59_01530) - 311939..312250 (-) 312 WP_002935948.1 hypothetical protein -
  PFZ59_RS01535 (PFZ59_01535) treR 312308..313021 (-) 714 WP_208582205.1 trehalose operon repressor Regulator
  PFZ59_RS01540 (PFZ59_01540) treP 313254..315248 (+) 1995 WP_277697355.1 PTS system trehalose-specific EIIBC component -
  PFZ59_RS01545 (PFZ59_01545) treC 315589..317214 (+) 1626 WP_277697356.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27171.07 Da        Isoelectric Point: 6.7418

>NTDB_id=777070 PFZ59_RS01535 WP_208582205.1 312308..313021(-) (treR) [Streptococcus suis strain SS/UPM/MY/F001]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRIRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTSREERDLMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=777070 PFZ59_RS01535 WP_208582205.1 312308..313021(-) (treR) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCGTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAGCAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTAACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTAACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTATACGTTCGATTGACGGTAAGG
TCTCTGTTGTGGATACAGATTATCTTGCTGTCGATGTCGTGCCAGAGTTGACAACTGCTATTGCTGAAAAATCAATTTAT
GAATATCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAGTCGAGAAGA
GCGCGATCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAGCAATTCC
AATATACAGAAAGCAAGCATAAAATTGACAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(91-226)

Bacterial regulatory proteins, gntR family (GntR)

(3-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.564

98.734

0.519