Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PIB33_RS22180 Genome accession   NZ_CP116391
Coordinates   4210089..4210607 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus subtilis strain GXD-20     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4205089..4215607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS22150 (PIB33_22150) yyaJ 4205592..4206947 (+) 1356 WP_029318525.1 MFS transporter -
  PIB33_RS22155 (PIB33_22155) maa 4206981..4207535 (-) 555 WP_032722825.1 sugar O-acetyltransferase -
  PIB33_RS22160 (PIB33_22160) yyaH 4207553..4207933 (-) 381 WP_003244460.1 VOC family protein -
  PIB33_RS22165 (PIB33_22165) ccpB 4207989..4208924 (-) 936 WP_032722826.1 transcriptional regulator CcpB -
  PIB33_RS22170 (PIB33_22170) xth 4208983..4209741 (-) 759 WP_032722827.1 exodeoxyribonuclease III -
  PIB33_RS22175 (PIB33_22175) rpsR 4209806..4210045 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  PIB33_RS22180 (PIB33_22180) ssbA 4210089..4210607 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  PIB33_RS22185 (PIB33_22185) rpsF 4210648..4210935 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  PIB33_RS22190 (PIB33_22190) ychF 4211046..4212146 (-) 1101 WP_032722828.1 redox-regulated ATPase YchF -
  PIB33_RS22195 (PIB33_22195) yyaE 4212273..4214276 (-) 2004 WP_032722829.1 molybdopterin-dependent oxidoreductase -
  PIB33_RS22200 (PIB33_22200) yyzM 4214327..4214533 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=777059 PIB33_RS22180 WP_003219228.1 4210089..4210607(-) (ssbA) [Bacillus subtilis strain GXD-20]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=777059 PIB33_RS22180 WP_003219228.1 4210089..4210607(-) (ssbA) [Bacillus subtilis strain GXD-20]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAACCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378