Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MWM13_RS06845 Genome accession   NZ_AP025609
Coordinates   1282712..1283077 (+) Length   121 a.a.
NCBI ID   WP_244347493.1    Uniprot ID   -
Organism   Thermus thermophilus strain SNM3-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1277712..1288077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MWM13_RS06820 (TthSNM33_13510) - 1277863..1278843 (-) 981 WP_244340523.1 YpdA family putative bacillithiol disulfide reductase -
  MWM13_RS06825 (TthSNM33_13520) pilA/pilA1 1279009..1279479 (+) 471 WP_244347490.1 GspH/FimT family protein Machinery gene
  MWM13_RS06830 (TthSNM33_13530) pilA/pilA2 1279513..1280094 (+) 582 WP_011173284.1 type II secretion system protein Machinery gene
  MWM13_RS06835 (TthSNM33_13540) pilA/pilA3 1280091..1280792 (+) 702 WP_244347491.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MWM13_RS06840 (TthSNM33_13550) comZ 1280803..1282479 (+) 1677 WP_244347492.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  MWM13_RS06845 (TthSNM33_13560) pilV 1282712..1283077 (+) 366 WP_244347493.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MWM13_RS06850 (TthSNM33_13570) - 1283137..1283508 (+) 372 WP_244347494.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MWM13_RS06855 (TthSNM33_13590) - 1283695..1284174 (+) 480 WP_244340535.1 DUF1640 domain-containing protein -
  MWM13_RS06860 - 1284250..1284787 (+) 538 Protein_1334 Uma2 family endonuclease -
  MWM13_RS06865 (TthSNM33_13610) - 1284810..1285109 (+) 300 WP_008631315.1 nucleotidyltransferase -
  MWM13_RS06870 (TthSNM33_13620) - 1285096..1285458 (+) 363 WP_060384345.1 HepT-like ribonuclease domain-containing protein -
  MWM13_RS06875 (TthSNM33_13630) - 1285492..1286049 (-) 558 WP_244347495.1 Uma2 family endonuclease -
  MWM13_RS06880 (TthSNM33_13640) - 1286068..1286724 (-) 657 WP_223968486.1 chromosome segregation protein ScpA -
  MWM13_RS06885 (TthSNM33_13650) trpS 1286721..1287734 (-) 1014 WP_011173293.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 12643.39 Da        Isoelectric Point: 7.7909

>NTDB_id=77703 MWM13_RS06845 WP_244347493.1 1282712..1283077(+) (pilV) [Thermus thermophilus strain SNM3-3]
MRNAKGFTLIELLIVIAIIAILAAVLIPNLLNARRNANTTAAQAYVRNVATAVEAARDPTTGALPTLGNCTDFVANPPAS
VKNCSVAANNDGVNFTVTADLTGARYDKVSFDSATGQFSFQ

Nucleotide


Download         Length: 366 bp        

>NTDB_id=77703 MWM13_RS06845 WP_244347493.1 1282712..1283077(+) (pilV) [Thermus thermophilus strain SNM3-3]
ATGCGGAACGCGAAAGGCTTCACCCTGATTGAGCTCCTGATCGTCATCGCCATCATCGCCATCCTGGCTGCGGTTCTCAT
TCCGAACCTTCTCAACGCTCGGAGGAACGCCAACACCACGGCCGCCCAAGCCTACGTGCGCAACGTGGCTACGGCGGTGG
AGGCCGCGAGGGACCCCACGACTGGGGCGTTGCCCACTCTTGGCAACTGTACCGATTTCGTTGCTAACCCTCCCGCTTCG
GTTAAAAACTGCAGCGTTGCGGCTAACAACGATGGCGTCAACTTCACGGTTACCGCCGATTTGACCGGGGCCCGTTACGA
TAAGGTCTCTTTTGACAGCGCCACCGGGCAGTTCAGCTTCCAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Pilin A4 (PilA4)

(38-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.206

88.43

0.479