Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   PIB33_RS12950 Genome accession   NZ_CP116391
Coordinates   2478918..2479721 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2473918..2484721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS12925 (PIB33_12925) glpQB 2475064..2475795 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  PIB33_RS12930 (PIB33_12930) yqiI 2475874..2476494 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  PIB33_RS12935 (PIB33_12935) yqiH 2476509..2476802 (-) 294 WP_003230284.1 lipoprotein -
  PIB33_RS12940 (PIB33_12940) - 2477110..2477262 (+) 153 WP_003230276.1 hypothetical protein -
  PIB33_RS12945 (PIB33_12945) yqiG 2477335..2478453 (+) 1119 WP_032722090.1 NADH-dependent flavin oxidoreductase -
  PIB33_RS12950 (PIB33_12950) spo0A 2478918..2479721 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  PIB33_RS12955 (PIB33_12955) spoIVB 2479997..2481277 (-) 1281 WP_032722092.1 SpoIVB peptidase -
  PIB33_RS12960 (PIB33_12960) recN 2481452..2483182 (-) 1731 WP_029317928.1 DNA repair protein RecN Machinery gene
  PIB33_RS12965 (PIB33_12965) argR 2483219..2483668 (-) 450 WP_003230265.1 arginine repressor ArgR -
  PIB33_RS12970 (PIB33_12970) yqxC 2483766..2484611 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=777019 PIB33_RS12950 WP_003226427.1 2478918..2479721(-) (spo0A) [Bacillus subtilis strain GXD-20]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=777019 PIB33_RS12950 WP_003226427.1 2478918..2479721(-) (spo0A) [Bacillus subtilis strain GXD-20]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1