Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   PIB33_RS11965 Genome accession   NZ_CP116391
Coordinates   2301695..2302315 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2296695..2307315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS11925 (PIB33_11925) ptsA 2297826..2298332 (-) 507 WP_026009842.1 PTS glucose transporter subunit IIA -
  PIB33_RS11930 (PIB33_11930) ypqA 2298470..2298889 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  PIB33_RS11935 (PIB33_11935) sppG 2298910..2299287 (-) 378 WP_004398696.1 YppG family protein -
  PIB33_RS11940 (PIB33_11940) yppF 2299475..2299663 (+) 189 WP_003230690.1 YppF family protein -
  PIB33_RS11945 (PIB33_11945) yppE 2299702..2300073 (-) 372 WP_003246080.1 YppE family protein -
  PIB33_RS11950 (PIB33_11950) yppD 2300119..2300364 (-) 246 WP_032722030.1 YppD family protein -
  PIB33_RS11955 (PIB33_11955) sspM 2300563..2300667 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  PIB33_RS11960 (PIB33_11960) yppC 2300692..2301654 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  PIB33_RS11965 (PIB33_11965) recU 2301695..2302315 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  PIB33_RS11970 (PIB33_11970) ponA 2302337..2305081 (+) 2745 WP_004398589.1 transglycosylase domain-containing protein -
  PIB33_RS11975 (PIB33_11975) ypoC 2305157..2305651 (-) 495 WP_009967579.1 YpoC family protein -
  PIB33_RS11980 (PIB33_11980) nth 2305648..2306307 (-) 660 WP_009967580.1 endonuclease III -
  PIB33_RS11985 (PIB33_11985) dnaD 2306326..2307024 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=777018 PIB33_RS11965 WP_004399067.1 2301695..2302315(+) (recU) [Bacillus subtilis strain GXD-20]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=777018 PIB33_RS11965 WP_004399067.1 2301695..2302315(+) (recU) [Bacillus subtilis strain GXD-20]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1