Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   PIB33_RS07765 Genome accession   NZ_CP116391
Coordinates   1482133..1482411 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain GXD-20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477133..1487411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS07745 (PIB33_07745) panEB 1478320..1479231 (+) 912 WP_032721491.1 ketopantoate reductase family protein -
  PIB33_RS07750 (PIB33_07750) ampS 1479265..1480497 (-) 1233 WP_003232341.1 aminopeptidase -
  PIB33_RS07755 (PIB33_07755) ykpC 1480607..1480741 (-) 135 WP_003238865.1 protein YkpC -
  PIB33_RS07760 (PIB33_07760) mreBH 1480842..1481849 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  PIB33_RS07765 (PIB33_07765) abrB 1482133..1482411 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  PIB33_RS07770 (PIB33_07770) kinC 1482601..1483887 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  PIB33_RS07775 (PIB33_07775) ykqA 1483903..1484730 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  PIB33_RS07780 (PIB33_07780) ktrC 1484793..1485458 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  PIB33_RS07785 (PIB33_07785) ade 1485614..1487347 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=777013 PIB33_RS07765 WP_003244728.1 1482133..1482411(+) (abrB) [Bacillus subtilis strain GXD-20]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=777013 PIB33_RS07765 WP_003244728.1 1482133..1482411(+) (abrB) [Bacillus subtilis strain GXD-20]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576