Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   PIB33_RS07645 Genome accession   NZ_CP116391
Coordinates   1458057..1458632 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1453057..1463632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS07615 (PIB33_07615) dapD 1453243..1453953 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  PIB33_RS07620 (PIB33_07620) dapI 1454023..1455147 (+) 1125 WP_032721474.1 N-acetyldiaminopimelate deacetylase -
  PIB33_RS07625 (PIB33_07625) ykuS 1455209..1455454 (+) 246 WP_003232382.1 YkuS family protein -
  PIB33_RS07630 (PIB33_07630) mscT 1455491..1456294 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  PIB33_RS07635 (PIB33_07635) ahpA 1456531..1457073 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  PIB33_RS07640 (PIB33_07640) ykuV 1457145..1457591 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  PIB33_RS07645 (PIB33_07645) rok 1458057..1458632 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  PIB33_RS07650 (PIB33_07650) cse15 1458673..1459638 (-) 966 WP_032721476.1 spore protein Cse15 -
  PIB33_RS07655 (PIB33_07655) mobA 1459775..1460374 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  PIB33_RS07660 (PIB33_07660) moeB 1460425..1461444 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  PIB33_RS07665 (PIB33_07665) glp 1461462..1462754 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  PIB33_RS07670 (PIB33_07670) mobB 1462715..1463236 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=777012 PIB33_RS07645 WP_003232378.1 1458057..1458632(+) (rok) [Bacillus subtilis strain GXD-20]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=777012 PIB33_RS07645 WP_003232378.1 1458057..1458632(+) (rok) [Bacillus subtilis strain GXD-20]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1