Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   PIB33_RS07530 Genome accession   NZ_CP116391
Coordinates   1438828..1439292 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain GXD-20     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433828..1444292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS07510 (PIB33_07510) kinA 1434295..1436115 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  PIB33_RS07515 (PIB33_07515) dapX 1436125..1437306 (-) 1182 WP_015252196.1 aminotransferase A -
  PIB33_RS07520 (PIB33_07520) - 1437508..1437669 (-) 162 WP_003245246.1 hypothetical protein -
  PIB33_RS07525 (PIB33_07525) cheV 1437873..1438784 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  PIB33_RS07530 (PIB33_07530) kre 1438828..1439292 (-) 465 WP_003232406.1 YkyB family protein Regulator
  PIB33_RS07535 (PIB33_07535) ykuC 1439418..1440710 (-) 1293 WP_017697269.1 MFS transporter -
  PIB33_RS07540 (PIB33_07540) ltdD 1440786..1441280 (-) 495 WP_072557193.1 L,D-transpeptidase family protein -
  PIB33_RS07545 (PIB33_07545) ppeE 1441337..1442197 (-) 861 WP_032721462.1 metallophosphoesterase -
  PIB33_RS07550 (PIB33_07550) fadH 1442340..1443104 (+) 765 WP_003232398.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=777011 PIB33_RS07530 WP_003232406.1 1438828..1439292(-) (kre) [Bacillus subtilis strain GXD-20]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=777011 PIB33_RS07530 WP_003232406.1 1438828..1439292(-) (kre) [Bacillus subtilis strain GXD-20]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAGCCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterProScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1