Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   PIB33_RS05560 Genome accession   NZ_CP116391
Coordinates   1079313..1079891 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074313..1084891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS22285 - 1074824..1075339 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  PIB33_RS22290 - 1075580..1076206 (-) 627 Protein_1023 protoglobin domain-containing protein -
  PIB33_RS05545 (PIB33_05545) comW 1076261..1077790 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  PIB33_RS05550 (PIB33_05550) yhxC 1077902..1078759 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  PIB33_RS05555 (PIB33_05555) yhzC 1078787..1079020 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  PIB33_RS05560 (PIB33_05560) comK 1079313..1079891 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  PIB33_RS05565 (PIB33_05565) yhxD 1079938..1080837 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  PIB33_RS05570 (PIB33_05570) yhjA 1081054..1081323 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  PIB33_RS05575 (PIB33_05575) yhjB 1081366..1082835 (-) 1470 WP_032721274.1 sodium:solute symporter -
  PIB33_RS05580 (PIB33_05580) yhjC 1082832..1083032 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  PIB33_RS05585 (PIB33_05585) - 1083240..1083602 (-) 363 WP_024571727.1 hypothetical protein -
  PIB33_RS05590 (PIB33_05590) yhjE 1083754..1084377 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  PIB33_RS05595 (PIB33_05595) lepB 1084379..1084885 (+) 507 WP_032721278.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=776999 PIB33_RS05560 WP_029317573.1 1079313..1079891(+) (comK) [Bacillus subtilis strain GXD-20]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=776999 PIB33_RS05560 WP_029317573.1 1079313..1079891(+) (comK) [Bacillus subtilis strain GXD-20]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995