Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   PIB33_RS04495 Genome accession   NZ_CP116391
Coordinates   887849..888643 (+) Length   264 a.a.
NCBI ID   WP_003233555.1    Uniprot ID   -
Organism   Bacillus subtilis strain GXD-20     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 882849..893643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB33_RS04465 (PIB33_04465) sxzA 883688..884719 (+) 1032 WP_003233568.1 iron chelate uptake ABC transporter family permease subunit -
  PIB33_RS04470 (PIB33_04470) yfhB 884834..885715 (+) 882 WP_032723009.1 PhzF family phenazine biosynthesis isomerase -
  PIB33_RS04475 (PIB33_04475) yfhC 885803..886387 (+) 585 WP_032723010.1 nitroreductase -
  PIB33_RS04480 (PIB33_04480) yfhD 886426..886617 (-) 192 WP_003233561.1 YfhD family protein -
  PIB33_RS04485 (PIB33_04485) yfhE 886684..886794 (-) 111 WP_003223230.1 YfhE family protein -
  PIB33_RS04490 (PIB33_04490) yfhF 886849..887760 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  PIB33_RS04495 (PIB33_04495) recX 887849..888643 (+) 795 WP_003233555.1 recombination regulator RecX Regulator
  PIB33_RS04500 (PIB33_04500) yfhH 888645..888959 (+) 315 WP_003233553.1 YfhH family protein -
  PIB33_RS04505 (PIB33_04505) yfhI 889103..890296 (+) 1194 WP_080010604.1 MFS transporter -
  PIB33_RS04510 (PIB33_04510) sspK 890328..890480 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  PIB33_RS04515 (PIB33_04515) yfhJ 890605..890874 (+) 270 WP_003243789.1 YfhJ family protein -
  PIB33_RS04520 (PIB33_04520) yfhK 891019..891537 (+) 519 WP_032677434.1 SH3 domain-containing protein -
  PIB33_RS04525 (PIB33_04525) spdL 891622..891954 (+) 333 WP_032677433.1 SdpC immunity protein SpdL -
  PIB33_RS04530 (PIB33_04530) ephM 891941..892801 (+) 861 WP_003233547.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31001.22 Da        Isoelectric Point: 6.6686

>NTDB_id=776994 PIB33_RS04495 WP_003233555.1 887849..888643(+) (recX) [Bacillus subtilis strain GXD-20]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFASAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTKE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=776994 PIB33_RS04495 WP_003233555.1 887849..888643(+) (recX) [Bacillus subtilis strain GXD-20]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAAATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATCGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCTCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAAGGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992