Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   QWI19_RS05425 Genome accession   NZ_CP129123
Coordinates   1045427..1046170 (+) Length   247 a.a.
NCBI ID   WP_015252439.1    Uniprot ID   -
Organism   Bacillus subtilis strain 6D1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040427..1051170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS05390 yhaI 1040756..1041097 (+) 342 WP_009966921.1 YhaI family protein -
  QWI19_RS05395 scoC 1041094..1041705 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  QWI19_RS05400 yhaH 1041884..1042240 (-) 357 WP_003245875.1 YtxH domain-containing protein -
  QWI19_RS05405 - 1042370..1042561 (+) 192 WP_003233238.1 hypothetical protein -
  QWI19_RS05410 trpP 1042635..1043153 (-) 519 WP_003233236.1 tryptophan transporter TrpP -
  QWI19_RS05415 serC 1043278..1044357 (-) 1080 WP_015252440.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  QWI19_RS05420 hinT 1044504..1044941 (-) 438 WP_003233231.1 HIT family protein -
  QWI19_RS05425 pptA 1045427..1046170 (+) 744 WP_015252439.1 ABC transporter ATP-binding protein EcsA Regulator
  QWI19_RS05430 ecsB 1046163..1047389 (+) 1227 WP_048654855.1 ABC transporter permease EcsB -
  QWI19_RS05435 ecsC 1047409..1048119 (+) 711 WP_015252437.1 EcsC family protein -
  QWI19_RS05440 sndC 1048137..1049327 (-) 1191 WP_044052577.1 N-acetyl amino acid acetylase SndC -
  QWI19_RS05445 - 1049400..1050791 (-) 1392 WP_080019530.1 hypothetical protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27738.20 Da        Isoelectric Point: 5.9114

>NTDB_id=776973 QWI19_RS05425 WP_015252439.1 1045427..1046170(+) (pptA) [Bacillus subtilis strain 6D1]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFSEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=776973 QWI19_RS05425 WP_015252439.1 1045427..1046170(+) (pptA) [Bacillus subtilis strain 6D1]
ATGTCTCTGCTATCGGTAAAAGACTTAACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTCGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACATATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTTCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATATGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAGAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAACGGATGAATGAAGCGAAAAAAGGCGGGGCGAGCGT
GCTGATGTCAACACACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547