Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   QWI19_RS02455 Genome accession   NZ_CP129123
Coordinates   478507..478941 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 6D1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 473507..483941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS02425 ydaD 474155..475015 (+) 861 WP_015252798.1 SDR family oxidoreductase -
  QWI19_RS02430 lyxE 475031..475534 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  QWI19_RS02435 ydaF 475622..476173 (+) 552 WP_015252797.1 GNAT family N-acetyltransferase -
  QWI19_RS02440 ydaG 476251..476673 (+) 423 WP_015252796.1 pyridoxamine 5'-phosphate oxidase family protein -
  QWI19_RS02445 amj 477179..477988 (+) 810 WP_015252795.1 lipid II flippase Amj -
  QWI19_RS02450 ydzA 478032..478322 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  QWI19_RS02455 lrpC 478507..478941 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  QWI19_RS02460 topB 479006..481189 (+) 2184 WP_015252793.1 DNA topoisomerase III -
  QWI19_RS02465 ephJ 481391..482479 (+) 1089 WP_015252792.1 hypothetical protein -
  QWI19_RS02470 epsK 482460..483311 (+) 852 WP_015252791.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=776962 QWI19_RS02455 WP_003246585.1 478507..478941(+) (lrpC) [Bacillus subtilis strain 6D1]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=776962 QWI19_RS02455 WP_003246585.1 478507..478941(+) (lrpC) [Bacillus subtilis strain 6D1]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1