Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   QU610_RS00775 Genome accession   NZ_CP129105
Coordinates   153363..154412 (-) Length   349 a.a.
NCBI ID   WP_137297042.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 148363..159412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS00755 (QU610_00755) rpsL 149424..149831 (+) 408 WP_001142321.1 30S ribosomal protein S12 -
  QU610_RS00760 (QU610_00760) rpsG 149847..150314 (+) 468 WP_001254351.1 30S ribosomal protein S7 -
  QU610_RS00765 (QU610_00765) fusA 150326..152404 (+) 2079 WP_000101821.1 elongation factor G -
  QU610_RS00770 (QU610_00770) - 152998..153216 (+) 219 WP_000744170.1 hypothetical protein -
  QU610_RS00775 (QU610_00775) waaF 153363..154412 (-) 1050 WP_137297042.1 lipopolysaccharide heptosyltransferase II Regulator
  QU610_RS00780 (QU610_00780) hisS 154474..155802 (+) 1329 WP_137297043.1 histidine--tRNA ligase -
  QU610_RS00785 (QU610_00785) asd 155789..156829 (+) 1041 WP_137297044.1 aspartate-semialdehyde dehydrogenase -
  QU610_RS00790 (QU610_00790) - 157237..158292 (+) 1056 WP_290137015.1 DUF874 family protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 39557.36 Da        Isoelectric Point: 9.5815

>NTDB_id=776908 QU610_RS00775 WP_137297042.1 153363..154412(-) (waaF) [Helicobacter pylori strain HP45k]
MSVNAPKRMRILLRLPNWLGDGVMASSLFYTLKHHYPKAHFILVGPQITCELFKKDEKIEAVFIDDTKKSFFRLLATHKL
AQKIGRCDIAITLNNHFYSAFLLYATKTPVRIGFAQLFRSLFLSHAIAPAPKEYHQVEKYCFLFSQFLKKELDQKSVLPL
KLAFNLPTHTPNTPKKIGFNPSASYGSAKRWPASYYAEVSAVLLEEGHEIYFFGAKEDTIVSEEILKLIKGLLKNPLLFH
NAYNLCGKTSIEELIQRIAILDLFITNDSGPMHVAASVQTPLIALFGPTDEKETRPYKAQKAIVLNHHLSCSPCKKRVCP
LKNEKNHLCMRSITPLEVLEAARTLLEEG

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=776908 QU610_RS00775 WP_137297042.1 153363..154412(-) (waaF) [Helicobacter pylori strain HP45k]
ATGAGCGTAAATGCACCCAAACGCATGCGTATTTTATTGCGTTTGCCTAATTGGTTAGGCGATGGGGTGATGGCAAGCTC
GCTTTTTTACACCCTTAAACACCACTACCCTAAAGCGCATTTTATCTTAGTGGGCCCACAAATCACTTGCGAACTTTTCA
AAAAAGATGAAAAAATAGAAGCCGTTTTTATAGACGACACCAAAAAATCCTTTTTCAGGCTGCTAGCCACTCACAAACTC
GCTCAAAAAATAGGGCGTTGCGATATAGCGATCACTTTAAACAACCATTTCTATTCCGCTTTTTTGCTCTATGCGACAAA
AACGCCCGTTCGCATCGGTTTTGCTCAACTTTTTCGTTCTTTGTTTCTCAGCCATGCGATCGCTCCTGCCCCTAAAGAGT
ATCATCAAGTGGAAAAGTATTGCTTTTTATTTTCGCAATTTTTAAAAAAAGAATTGGATCAAAAAAGCGTTTTACCCTTA
AAACTGGCCTTTAATCTCCCCACTCACACCCCAAACACCCCTAAAAAAATCGGCTTTAACCCTAGTGCAAGCTATGGGAG
CGCTAAAAGATGGCCAGCTTCTTATTACGCTGAAGTTTCTGCTGTTTTGTTAGAAGAAGGGCATGAAATTTATTTTTTTG
GGGCTAAAGAAGATACTATCGTTTCTGAAGAAATTTTAAAACTCATCAAAGGCTTATTAAAAAACCCCTTATTGTTCCAT
AACGCTTACAATCTGTGCGGGAAAACAAGCATTGAAGAATTGATACAGCGCATCGCTATTTTAGATTTATTCATCACTAA
CGATAGCGGCCCTATGCATGTGGCTGCTAGCGTGCAAACCCCCTTAATCGCTCTTTTTGGCCCCACTGATGAAAAAGAGA
CTCGCCCCTATAAAGCTCAAAAAGCGATCGTATTGAACCACCATTTAAGCTGTTCGCCCTGCAAGAAACGAGTTTGCCCT
TTAAAGAACGAAAAAAACCACTTGTGCATGCGATCTATCACGCCCCTTGAAGTCCTAGAAGCCGCTCGCACTCTTTTAGA
AGAGGGTTAA

Domains

Predicted by InterProScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(78-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

37.719

97.994

0.37