Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   PKU16_RS07150 Genome accession   NZ_CP116385
Coordinates   1494109..1495923 (-) Length   604 a.a.
NCBI ID   WP_060654625.1    Uniprot ID   -
Organism   Weissella cibaria strain BAL3C-5 C120T     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1489109..1500923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PKU16_RS07125 (PKU16_07125) - 1489603..1490703 (-) 1101 WP_043711534.1 M24 family metallopeptidase -
  PKU16_RS07130 (PKU16_07130) ccpA 1490955..1491956 (+) 1002 WP_043709999.1 catabolite control protein A -
  PKU16_RS07135 (PKU16_07135) - 1492015..1492587 (-) 573 WP_010372524.1 hypothetical protein -
  PKU16_RS07140 (PKU16_07140) - 1492603..1492992 (-) 390 WP_010372520.1 DUF948 domain-containing protein -
  PKU16_RS07145 (PKU16_07145) - 1493300..1494019 (+) 720 WP_043709532.1 MIP/aquaporin family protein -
  PKU16_RS07150 (PKU16_07150) pepF 1494109..1495923 (-) 1815 WP_060654625.1 oligoendopeptidase F Regulator
  PKU16_RS07155 (PKU16_07155) - 1495963..1496997 (-) 1035 WP_190341324.1 competence protein CoiA -
  PKU16_RS07160 (PKU16_07160) - 1497099..1498463 (-) 1365 WP_060654622.1 PTS sugar transporter subunit IIC -
  PKU16_RS07165 (PKU16_07165) - 1498530..1499981 (-) 1452 WP_271681036.1 6-phospho-beta-glucosidase -
  PKU16_RS07170 (PKU16_07170) - 1499987..1500310 (-) 324 WP_010372502.1 PTS lactose/cellobiose transporter subunit IIA -
  PKU16_RS07175 (PKU16_07175) - 1500356..1500673 (-) 318 WP_060654617.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67749.61 Da        Isoelectric Point: 4.2971

>NTDB_id=776894 PKU16_RS07150 WP_060654625.1 1494109..1495923(-) (pepF) [Weissella cibaria strain BAL3C-5 C120T]
MAKELPLRDALPESMTWNLQTIFASDEAWEDAFEELADRLESADFFAQSATTSGTDLYNALQYGLGVMRDLEKLYVYASM
KSDQDTANAYYQGLSNRAEALAARVSAAIAFFDPAVLSLSEAELTAFFEAEPKLGAYKHYFESILTQQGHVLTPDQEALL
AAAGDVFGASERTFGVLDNADIKFEAVANEDGELETLSNGVYSRLLESTDPEVRRNAFQTFYKSYVSLENTFASLIASHV
KGHNFMAAVHNYDNAREAALAGNHVPEVVYDTLVAEVNEALPLLHRYVALRKQLLGLDELHSYDLYTPILGEPDFTIDYE
SAQAEALKALAPLGEDYLEVVNTAFDNRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYL
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVTDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAQGVPL
TADVLDEAYGELNRRYYGPALKFDDEIAHEWERIPHFYYNFYVFQYSTGFAAATAMADKILTEGAPAVAAYKEYLKAGSS
AFPIDVMKKAGLDMTKPDYLRDTFKVFEERLNEFEALVAELAAE

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=776894 PKU16_RS07150 WP_060654625.1 1494109..1495923(-) (pepF) [Weissella cibaria strain BAL3C-5 C120T]
ATGGCCAAAGAATTACCATTACGAGATGCATTGCCCGAGTCAATGACTTGGAATTTGCAGACGATTTTTGCTTCTGATGA
AGCGTGGGAAGATGCCTTTGAAGAATTGGCCGATCGGTTAGAGTCAGCGGACTTCTTCGCCCAATCAGCAACGACGTCAG
GTACAGATTTGTACAATGCGTTGCAATACGGCTTGGGTGTGATGCGTGACTTAGAAAAGCTGTATGTCTATGCTTCAATG
AAGTCAGACCAAGATACAGCCAACGCTTATTATCAAGGGTTGAGCAATCGAGCTGAAGCCTTGGCGGCACGTGTTTCTGC
GGCCATTGCATTCTTTGACCCAGCTGTTTTGTCACTTTCAGAAGCTGAATTAACGGCCTTTTTTGAAGCAGAACCTAAGC
TGGGTGCGTACAAGCATTACTTCGAGAGTATTCTGACACAACAAGGTCATGTCTTAACGCCAGACCAAGAAGCATTGTTA
GCTGCTGCCGGGGATGTTTTTGGGGCTTCAGAACGGACGTTTGGTGTGTTGGATAATGCCGATATTAAGTTTGAAGCTGT
TGCCAACGAAGATGGTGAACTGGAGACGTTGTCAAACGGTGTCTATTCACGTTTGTTGGAGTCGACTGACCCGGAAGTAC
GTCGAAATGCTTTCCAAACGTTCTACAAGTCATATGTCTCACTTGAAAATACCTTTGCATCTTTGATCGCAAGTCACGTG
AAGGGTCATAACTTTATGGCTGCGGTTCACAACTATGATAATGCGCGTGAAGCTGCTTTAGCTGGTAACCATGTGCCAGA
AGTGGTGTACGATACATTGGTTGCGGAAGTAAATGAGGCGTTGCCATTGTTGCATCGTTACGTTGCCCTCCGAAAGCAAT
TGTTGGGCTTGGATGAATTGCACTCATACGATTTGTATACCCCAATTTTGGGTGAACCTGACTTTACGATTGATTACGAA
TCTGCTCAGGCTGAAGCATTAAAGGCGTTGGCACCATTGGGCGAAGATTATCTGGAAGTTGTCAATACAGCCTTTGATAA
TCGTTGGATTGATGTCATTGAGAATAAGGGCAAGCGTTCAGGAGCTTACTCGGGTGGTTCATACGATACAAATCCATTCA
TTTTGCTGAACTGGGTCGATAACTTGAACAATTTGAGCACTTTAGTTCACGAAATGGGCCACTCAGTGCACTCGTATTTG
ACTCGTCAAAATCAACCATACCACTACGGCGATTACCCAATCTTCTTGGCTGAAATTGCGTCAACGACGAACGAAAACTT
GTTGACGGATTACTTGCTTAAGACGGTGACGGATAAGAAGTTGCGTGCGTATATCTTGAATCAGTACTTGGATGGTGTGA
AGGGAACGGTCTTCCGTCAAACCCAATTTGCAGAGTTTGAGCAATGGATGCACGTTACGGATGCGCAAGGCGTGCCATTG
ACTGCTGATGTTTTGGATGAGGCCTATGGTGAGCTTAACCGACGTTACTACGGCCCAGCCTTGAAGTTTGATGATGAAAT
TGCGCACGAGTGGGAGCGTATTCCACACTTCTATTACAACTTCTACGTGTTCCAATACAGTACTGGTTTTGCTGCTGCGA
CGGCAATGGCGGACAAGATTTTGACTGAAGGGGCACCGGCTGTGGCAGCTTACAAGGAATACTTGAAGGCTGGATCATCT
GCATTCCCAATCGATGTGATGAAGAAGGCTGGGCTTGATATGACTAAGCCGGATTACTTGCGTGACACATTCAAAGTGTT
CGAAGAACGCTTGAACGAATTTGAAGCGTTGGTCGCAGAATTAGCTGCTGAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.469

97.848

0.523