Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   PK654_RS20160 Genome accession   NZ_CP116384
Coordinates   946905..947999 (-) Length   364 a.a.
NCBI ID   WP_271700730.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 941905..952999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS20145 (PK654_20145) - 943260..943550 (+) 291 WP_271699141.1 hypothetical protein -
  PK654_RS20150 (PK654_20150) - 943653..944321 (+) 669 WP_271699142.1 PilZ domain-containing protein -
  PK654_RS20155 (PK654_20155) - 944338..946908 (-) 2571 WP_271699143.1 LuxQ periplasmic sensor domain-containing protein -
  PK654_RS20160 (PK654_20160) luxP 946905..947999 (-) 1095 WP_271700730.1 substrate-binding domain-containing protein Regulator
  PK654_RS20165 (PK654_20165) - 948128..949279 (-) 1152 WP_271699144.1 conjugal transfer protein TraF -
  PK654_RS20170 (PK654_20170) - 949386..949673 (-) 288 WP_271699145.1 GIY-YIG nuclease family protein -
  PK654_RS20175 (PK654_20175) - 949676..950332 (-) 657 WP_271699147.1 YceH family protein -
  PK654_RS20180 (PK654_20180) - 950370..950561 (-) 192 WP_271699148.1 hypothetical protein -
  PK654_RS20185 (PK654_20185) - 950722..951036 (+) 315 WP_271699150.1 DUF496 family protein -
  PK654_RS20190 (PK654_20190) - 951093..951794 (-) 702 WP_271699152.1 hypothetical protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41242.89 Da        Isoelectric Point: 7.4212

>NTDB_id=776875 PK654_RS20160 WP_271700730.1 946905..947999(-) (luxP) [Vibrio sp. SCSIO 43137]
MKVITTLLFASALLASPFCYAMKNLSGYWTYPQFLKTHPQQNTLTKSMDVAINSNPIPITFNQTTPVKISVVYPGEQVSD
YWRRNIKAFEERLRELNIRYQIKKVFTRPNADTRQQNLSLNEALEDNTDYLIFTLDTGRHRKFIEHVLHGSDTKLILQNI
TTPVKAWASKQPFLYVGFDHLLGSLALAEYFKSVLPSRSEYSVMYFSQGYISDARGDTFIHAMSDLADYQLKSSFYTKAS
KESGYRSTKIALERYPDLKLVYACSTDVALGASQAIMESGKNILINGWGGGSAELEAIINGELDVTVMRMNDDTGVAMAE
AIKWDLEDKPVPTVYSGSFEIVSNSDSIQRIENLKQRAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=776875 PK654_RS20160 WP_271700730.1 946905..947999(-) (luxP) [Vibrio sp. SCSIO 43137]
ATGAAGGTAATCACAACACTGCTATTCGCATCTGCTCTGCTGGCATCTCCCTTCTGTTATGCGATGAAAAATCTGAGTGG
TTACTGGACTTACCCGCAATTCCTTAAAACTCATCCGCAGCAAAACACTCTTACCAAAAGTATGGATGTAGCGATTAACA
GCAACCCGATTCCCATTACCTTCAACCAGACAACTCCGGTAAAGATTTCTGTTGTCTATCCGGGAGAACAGGTATCCGAC
TACTGGCGAAGAAACATTAAGGCGTTTGAAGAGAGGCTCAGAGAGCTGAATATCCGTTATCAGATAAAAAAGGTGTTTAC
CCGGCCGAACGCTGATACGCGACAGCAAAATTTATCTTTAAACGAAGCCCTTGAGGATAACACTGACTATCTGATTTTTA
CTCTGGATACAGGGCGTCACCGTAAGTTTATAGAGCATGTGCTGCATGGCTCAGATACCAAATTGATTTTGCAGAATATC
ACCACACCAGTAAAAGCGTGGGCCAGCAAGCAGCCGTTCCTTTATGTCGGTTTTGATCACCTGTTGGGTAGTCTTGCACT
GGCAGAATATTTTAAATCGGTTCTTCCCTCTCGATCTGAATATTCAGTAATGTATTTTTCGCAGGGCTATATTAGTGATG
CCCGTGGAGATACCTTTATTCATGCCATGAGCGACCTAGCTGACTACCAGTTAAAATCTTCGTTCTATACCAAGGCCAGC
AAGGAGAGCGGTTATCGTTCAACTAAAATCGCCCTTGAACGATACCCTGATTTAAAACTGGTGTATGCCTGTTCAACAGA
CGTTGCTCTGGGGGCTTCGCAGGCAATTATGGAATCGGGAAAAAATATACTGATTAACGGCTGGGGAGGAGGGTCTGCCG
AGCTTGAAGCAATCATCAATGGAGAACTGGATGTTACTGTTATGAGGATGAATGATGATACAGGTGTTGCCATGGCCGAA
GCGATAAAGTGGGATCTGGAAGATAAACCTGTGCCGACAGTTTACTCCGGTAGCTTTGAAATTGTATCAAATTCCGACAG
TATTCAGAGAATAGAAAACCTCAAGCAGAGAGCGTTCAGGTACTCCGACCGATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-321)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

59.89

100

0.599