Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   QWH96_RS08560 Genome accession   NZ_CP128987
Coordinates   1686615..1687280 (-) Length   221 a.a.
NCBI ID   WP_003061146.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1681615..1692280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS08550 (QWH96_08550) - 1684835..1685857 (-) 1023 WP_176605685.1 IS30 family transposase -
  QWH96_RS08555 (QWH96_08555) raiA 1685987..1686535 (-) 549 WP_003061817.1 ribosome-associated translation inhibitor RaiA -
  QWH96_RS08560 comFC/cflB 1686615..1687280 (-) 666 WP_003061146.1 ComF family protein Machinery gene
  QWH96_RS08565 (QWH96_08565) comFA/cflA 1687252..1688577 (-) 1326 WP_003059901.1 DEAD/DEAH box helicase Machinery gene
  QWH96_RS08570 (QWH96_08570) - 1688633..1689271 (+) 639 WP_003062333.1 YigZ family protein -
  QWH96_RS08575 (QWH96_08575) cysK 1689375..1690310 (+) 936 WP_003062335.1 cysteine synthase A -
  QWH96_RS08580 (QWH96_08580) - 1690462..1690821 (-) 360 WP_003061410.1 S1 RNA-binding domain-containing protein -
  QWH96_RS08585 (QWH96_08585) - 1690821..1692221 (-) 1401 WP_338433660.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25365.33 Da        Isoelectric Point: 8.3826

>NTDB_id=776866 QWH96_RS08560 WP_003061146.1 1686615..1687280(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MICLLCQQFSPLPLRITDILFLKPQTTTLCQECQQGFQKISFTSCQTCNAPSQSSPCSDCLEWEVKGYEVNHKSLYQYNA
AMKAYFSQYKFQGDYLLRHVFAQELAQVIKKDYPDFTPVPVPISKERYEERHFNQVTAILEAGNINYCMLFKRMDTSRQS
SKTKNERLLSKDAYRLSTLSELPAKILIIDDIYTTGSTIIALKKLLMHVGNSDIKSLSIAR

Nucleotide


Download         Length: 666 bp        

>NTDB_id=776866 QWH96_RS08560 WP_003061146.1 1686615..1687280(-) (comFC/cflB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGATATGCCTCCTATGTCAACAATTTAGTCCATTACCCTTGCGAATAACGGATATTCTCTTTTTGAAACCTCAAACAAC
AACTCTCTGTCAGGAGTGTCAACAAGGGTTTCAAAAGATAAGCTTCACGAGTTGCCAAACCTGTAACGCTCCTTCCCAAA
GCTCTCCATGTTCTGATTGTTTAGAATGGGAAGTCAAAGGATACGAGGTTAATCACAAAAGTTTATATCAGTATAACGCT
GCTATGAAAGCTTATTTTAGCCAATATAAGTTTCAAGGAGACTACTTGCTAAGACATGTCTTTGCTCAAGAATTAGCCCA
AGTTATTAAAAAAGACTATCCAGATTTTACTCCTGTTCCAGTTCCTATCAGTAAGGAGCGTTATGAAGAACGTCATTTCA
ATCAAGTGACTGCTATACTTGAAGCAGGGAATATTAACTATTGCATGCTTTTTAAAAGAATGGATACTAGCCGTCAGTCT
TCTAAAACTAAAAATGAAAGATTATTATCCAAAGATGCCTATCGTCTCTCCACCCTCTCTGAATTACCAGCAAAAATCCT
CATTATTGATGATATTTACACTACCGGTAGCACCATTATCGCTTTGAAAAAACTATTAATGCATGTTGGAAATAGTGACA
TCAAAAGTTTGTCAATTGCACGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus mitis NCTC 12261

41.629

100

0.416
  comFC/cflB Streptococcus mitis SK321

41.176

100

0.412
  comFC/cflB Streptococcus pneumoniae TIGR4

40.724

100

0.407
  comFC/cflB Streptococcus pneumoniae Rx1

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae D39

40.271

100

0.403
  comFC/cflB Streptococcus pneumoniae R6

40.271

100

0.403