Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   PK654_RS13010 Genome accession   NZ_CP116383
Coordinates   2782304..2782822 (-) Length   172 a.a.
NCBI ID   WP_271696197.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2777304..2787822
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS12985 (PK654_12985) rimM 2777455..2777985 (-) 531 WP_271696193.1 ribosome maturation factor RimM -
  PK654_RS12990 (PK654_12990) rpsP 2778029..2778277 (-) 249 WP_171752692.1 30S ribosomal protein S16 -
  PK654_RS12995 (PK654_12995) ffh 2778488..2779873 (-) 1386 WP_271696194.1 signal recognition particle protein -
  PK654_RS13000 (PK654_13000) - 2780043..2780840 (+) 798 WP_271696195.1 inner membrane protein YpjD -
  PK654_RS13005 (PK654_13005) - 2780950..2782224 (+) 1275 WP_271696196.1 CNNM domain-containing protein -
  PK654_RS13010 (PK654_13010) luxS 2782304..2782822 (-) 519 WP_271696197.1 S-ribosylhomocysteine lyase Regulator
  PK654_RS13015 (PK654_13015) gshA 2782864..2784438 (-) 1575 WP_271696198.1 glutamate--cysteine ligase -
  PK654_RS13020 (PK654_13020) - 2784562..2787414 (-) 2853 WP_271696199.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19028.86 Da        Isoelectric Point: 4.6881

>NTDB_id=776866 PK654_RS13010 WP_271696197.1 2782304..2782822(-) (luxS) [Vibrio sp. SCSIO 43137]
MPLLDSFTVDHTRMTAPAVRIAKTMTTPKGDTITVFDLRFCAPNKDILSEQGIHTLEHLYAGFMRAHLNGENVEIIDISP
MGCRTGFYMSLIGTPAETTVAEAWLAAMKDVLKVENQNQIPELNEYQCGTYSMHSLDDAKAISQAIIDAGITVNKNDELA
LPESMLQELKIK

Nucleotide


Download         Length: 519 bp        

>NTDB_id=776866 PK654_RS13010 WP_271696197.1 2782304..2782822(-) (luxS) [Vibrio sp. SCSIO 43137]
ATGCCACTATTAGATAGTTTTACAGTTGACCATACGCGAATGACTGCGCCGGCTGTACGTATCGCTAAAACCATGACCAC
ACCAAAAGGCGACACCATTACGGTATTCGACTTGCGCTTCTGTGCACCAAACAAAGACATTCTTTCTGAGCAGGGTATCC
ATACTCTGGAGCACCTGTATGCCGGCTTTATGCGTGCGCACCTGAACGGAGAGAATGTTGAAATTATCGATATTTCTCCA
ATGGGCTGTCGTACCGGTTTCTATATGAGCCTGATTGGTACTCCTGCAGAAACAACAGTAGCAGAAGCATGGCTTGCAGC
GATGAAAGATGTGCTGAAAGTAGAAAATCAGAATCAGATCCCTGAGCTGAATGAGTATCAGTGTGGCACTTACTCTATGC
ACTCTCTGGATGACGCTAAAGCCATTTCTCAGGCTATTATCGATGCAGGTATCACCGTTAACAAAAACGATGAGCTGGCA
CTACCTGAGTCTATGCTGCAAGAGCTGAAGATTAAGTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

82.456

99.419

0.82