Detailed information NTG0776865

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PK654_RS12955
• Genome accession: NZ_CP116383
• Coordinates: 2773687..2774556 (+)
• Length: 289 a.a.
• NCBI ID: WP_271696187.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43137
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2768687..2779556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PK654_RS12930 (PK654_12930)	ampD	2768989..2769534 (-)	546	WP_271696183.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
PK654_RS12935 (PK654_12935)	nadC	2769705..2770592 (+)	888	WP_271698881.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PK654_RS12940 (PK654_12940)	pilA	2770799..2771212 (+)	414	WP_271696184.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
PK654_RS12945 (PK654_12945)	pilB	2771218..2772429 (+)	1212	WP_271696185.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
PK654_RS12950 (PK654_12950)	-	2772430..2773653 (+)	1224	WP_271696186.1	type II secretion system F family protein	-
PK654_RS12955 (PK654_12955)	pilD	2773687..2774556 (+)	870	WP_271696187.1	A24 family peptidase	Machinery gene
PK654_RS12960 (PK654_12960)	coaE	2774558..2775169 (+)	612	WP_271696188.1	dephospho-CoA kinase	-
PK654_RS12965 (PK654_12965)	zapD	2775195..2775935 (+)	741	WP_271696189.1	cell division protein ZapD	-
PK654_RS12970 (PK654_12970)	yacG	2775993..2776184 (+)	192	WP_271696190.1	DNA gyrase inhibitor YacG	-
PK654_RS12975 (PK654_12975)	rplS	2776277..2776630 (-)	354	WP_271696191.1	50S ribosomal protein L19	-
PK654_RS12980 (PK654_12980)	trmD	2776672..2777430 (-)	759	WP_271696192.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
PK654_RS12985 (PK654_12985)	rimM	2777455..2777985 (-)	531	WP_271696193.1	ribosome maturation factor RimM	-
PK654_RS12990 (PK654_12990)	rpsP	2778029..2778277 (-)	249	WP_171752692.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32392.56 Da
• Isoelectric Point: 7.5857

>NTDB_id=776865 PK654_RS12955 WP_271696187.1 2773687..2774556(+) (pilD) [Vibrio sp. SCSIO 43137]
MEAFYIYPWLFPLFSAVFGLIIGSFLNVVIHRLPIMMEREWKQDCADSFPELEIKTDPTPFNLSKPNSRCPECKSPVQLK
DNIPLISWLLLRGKCRHCNAAISARYPMVELLSSLLCVAIAQHFGFSAFSVALLFFTFALIAMTFIDLDTMLLPDQLTLP
LTWAGILLALLGWSPVSLQDAVIGAMAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWQQLPIVVLLSSVVGL
VFGLIQLRLQKKGIDKSFPFGPYLAIAGWITLIWGERITNWYFTSVLGL

Nucleotide

• Length: 870 bp

>NTDB_id=776865 PK654_RS12955 WP_271696187.1 2773687..2774556(+) (pilD) [Vibrio sp. SCSIO 43137]
ATGGAAGCGTTTTATATTTATCCCTGGCTATTTCCGCTGTTTTCAGCTGTTTTCGGCCTGATTATCGGCAGCTTTTTAAA
CGTTGTTATTCACCGTCTTCCGATTATGATGGAACGTGAATGGAAACAAGATTGCGCAGACTCTTTTCCTGAGCTGGAGA
TCAAAACAGACCCCACCCCATTTAACCTGAGTAAGCCAAACTCACGTTGTCCTGAGTGTAAATCACCCGTTCAGCTTAAG
GATAATATTCCGCTGATTAGCTGGCTGCTTCTCAGGGGAAAGTGCCGTCATTGCAATGCCGCCATAAGCGCGCGTTACCC
TATGGTCGAGCTACTGAGCTCTCTGTTGTGTGTTGCCATTGCCCAACACTTCGGTTTTAGTGCTTTCTCTGTTGCGCTGT
TATTTTTTACTTTTGCCCTGATCGCCATGACCTTTATCGATCTGGACACCATGTTACTTCCGGATCAACTCACCCTTCCC
CTTACCTGGGCAGGAATATTACTCGCACTACTTGGCTGGAGTCCGGTTAGCCTGCAAGATGCCGTTATCGGTGCAATGGC
GGGCTATCTCAGTCTCTGGTCTGTCTACTGGTTGTTTAAACTGGTCACGGGTAAAGAGGGAATGGGCTATGGTGATTTTA
AACTACTGGCCGCCATAGGTGCATGGCTGGGCTGGCAACAACTGCCTATTGTCGTACTGCTCTCCTCCGTGGTCGGTCTG
GTGTTTGGCCTGATTCAGTTAAGGCTGCAAAAAAAAGGAATAGATAAATCATTTCCTTTCGGCCCCTATCTTGCCATTGC
AGGCTGGATAACCCTTATCTGGGGAGAACGGATAACGAATTGGTACTTCACCTCTGTGTTAGGGCTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	70.242	100	0.702
pilD	Vibrio cholerae strain A1552	70.139	99.654	0.699
pilD	Acinetobacter nosocomialis M2	49.627	92.734	0.46
pilD	Acinetobacter baumannii D1279779	48.881	92.734	0.453
pilD	Neisseria gonorrhoeae MS11	46.786	96.886	0.453