Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PK654_RS10285 Genome accession   NZ_CP116383
Coordinates   2208713..2210125 (-) Length   470 a.a.
NCBI ID   WP_271695707.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2203713..2215125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS10250 (PK654_10250) moaE 2204417..2204872 (-) 456 WP_271695700.1 molybdopterin synthase catalytic subunit MoaE -
  PK654_RS10255 (PK654_10255) moaD 2204876..2205121 (-) 246 WP_271695701.1 molybdopterin synthase sulfur carrier subunit -
  PK654_RS10260 (PK654_10260) moaC 2205118..2205597 (-) 480 WP_271695702.1 cyclic pyranopterin monophosphate synthase MoaC -
  PK654_RS10265 (PK654_10265) moaB 2205603..2206115 (-) 513 WP_271695703.1 molybdenum cofactor biosynthesis protein B -
  PK654_RS10270 (PK654_10270) moaA 2206138..2207127 (-) 990 WP_271695704.1 GTP 3',8-cyclase MoaA -
  PK654_RS10275 (PK654_10275) - 2207418..2208305 (+) 888 WP_271695705.1 YvcK family protein -
  PK654_RS10280 (PK654_10280) - 2208329..2208667 (-) 339 WP_271695706.1 Hpt domain-containing protein -
  PK654_RS10285 (PK654_10285) luxO 2208713..2210125 (-) 1413 WP_271695707.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  PK654_RS10290 (PK654_10290) uvrB 2210454..2212484 (-) 2031 WP_271695708.1 excinuclease ABC subunit UvrB -
  PK654_RS10300 (PK654_10300) - 2213574..2214398 (-) 825 WP_271695709.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 52432.92 Da        Isoelectric Point: 5.4253

>NTDB_id=776861 PK654_RS10285 WP_271695707.1 2208713..2210125(-) (luxO) [Vibrio sp. SCSIO 43137]
MNNSTSVQKSKYLLMVEDTASVAALYRSFLSPLGIQIDIVSSGREALERLKTRTPDLILLDLRLPDMTGMDVLHSTKKLY
PDVPIIFMTAHGSIDTAVEAMRYGAQDFLIKPCEADRLRVTVNNAIRKAEKIKIGVEHKRDGSNNYQGFIGSSQTMQAVY
KTIDSAAPSKASIFITGESGTGKEVCAEAIHAASKRRDKPFIAINCAAIPKDLIESELFGHVKGAFTGAASEREGAAELA
DGGTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPL
RERGEDVVEIAYSLLGFISLEEEKDFARFSDEVVKRFVDYEWPGNVRQLQNVLRNAVVLNQGKEINLSMLPPPINQPSTE
IALAKDNDVTEQPIVYSEQDITPLWKVERRTIEQAIDACNGNVPKAANALEVSPSTIYRKIQAWNALPEN

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=776861 PK654_RS10285 WP_271695707.1 2208713..2210125(-) (luxO) [Vibrio sp. SCSIO 43137]
ATGAATAATTCGACTTCGGTTCAAAAAAGCAAATATCTGCTTATGGTAGAGGATACTGCGTCTGTTGCTGCCCTTTATCG
CTCTTTTCTTTCCCCTCTCGGTATCCAAATCGATATTGTCAGTAGTGGCAGGGAGGCGCTGGAAAGACTAAAAACCCGTA
CTCCTGACCTAATCCTGCTTGATCTCCGGTTGCCGGATATGACAGGTATGGACGTTCTACATAGCACCAAAAAACTTTAT
CCGGATGTACCTATTATCTTTATGACGGCTCATGGCTCTATCGACACGGCCGTAGAAGCGATGCGTTATGGTGCACAGGA
CTTCCTGATTAAGCCCTGCGAGGCAGACAGGCTCAGGGTTACGGTCAACAATGCCATCCGTAAGGCAGAAAAAATTAAGA
TTGGCGTTGAACATAAACGCGATGGGTCTAATAACTATCAGGGTTTTATAGGCAGTAGCCAGACCATGCAGGCTGTCTAC
AAAACCATTGACTCAGCGGCACCGAGTAAGGCCAGTATTTTTATTACCGGGGAGAGTGGTACCGGTAAAGAGGTGTGTGC
AGAAGCGATTCACGCAGCCAGTAAAAGAAGAGATAAGCCGTTTATTGCCATTAACTGCGCTGCCATCCCGAAAGACTTAA
TTGAGAGTGAACTGTTTGGTCATGTTAAAGGTGCTTTTACCGGTGCAGCGTCGGAGCGGGAAGGTGCTGCCGAGCTTGCT
GATGGCGGAACCCTGTTTCTTGATGAACTGTGTGAAATGGATTTAGACCTGCAGACGAAACTGCTGCGCTTTATTCAGAC
GGGTACCTTCCAGAAAGTTGGTTCATCAAAGATGAAGAGTGTTGATGTGCGATTTGTTTGTGCCACCAACCGTGACCCGT
GGAAGGAAGTACAGGAAGGGCGATTCCGCGAAGACTTGTATTATCGTTTGTATGTTATCCCTCTACACCTTCCTCCTTTG
AGAGAGAGGGGAGAGGATGTCGTGGAAATTGCTTATTCCCTGCTTGGATTTATTTCGCTGGAGGAAGAGAAAGATTTCGC
CCGATTTTCTGATGAGGTAGTAAAACGTTTTGTAGACTATGAATGGCCGGGTAATGTTCGTCAGTTACAGAATGTACTCA
GAAATGCCGTGGTATTAAATCAGGGTAAAGAGATTAATTTGAGCATGTTACCACCGCCAATTAATCAACCTAGCACAGAA
ATTGCTTTAGCCAAGGATAATGATGTAACTGAACAGCCGATTGTCTATTCTGAACAAGATATTACTCCGCTATGGAAGGT
AGAGAGAAGGACAATCGAACAGGCGATAGATGCATGTAATGGAAATGTACCTAAAGCAGCGAATGCGTTGGAGGTGAGTC
CATCTACCATCTACAGAAAAATTCAGGCATGGAATGCATTACCGGAAAACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)

Sigma-54 interaction domain (Sigma54_activat)

(150-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

79.56

96.809

0.77