Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   PK654_RS06980 Genome accession   NZ_CP116383
Coordinates   1483272..1484696 (-) Length   474 a.a.
NCBI ID   WP_271698483.1    Uniprot ID   -
Organism   Vibrio sp. SCSIO 43137     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1478272..1489696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PK654_RS06955 (PK654_06955) - 1479189..1479839 (+) 651 WP_271698478.1 thiopurine S-methyltransferase -
  PK654_RS06960 (PK654_06960) purT 1479864..1481039 (-) 1176 WP_271698479.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  PK654_RS06965 (PK654_06965) cdd 1481168..1482055 (-) 888 WP_271698480.1 cytidine deaminase -
  PK654_RS06970 (PK654_06970) - 1482230..1482907 (-) 678 WP_271698826.1 LrgB family protein -
  PK654_RS06975 (PK654_06975) - 1482907..1483269 (-) 363 WP_271698481.1 CidA/LrgA family protein -
  PK654_RS06980 (PK654_06980) sbcB 1483272..1484696 (-) 1425 WP_271698483.1 exodeoxyribonuclease I Machinery gene
  PK654_RS06985 (PK654_06985) - 1484830..1485537 (-) 708 WP_271698485.1 NAD(P)H-binding protein -
  PK654_RS06990 (PK654_06990) - 1485951..1486904 (+) 954 WP_271698486.1 L-lactate dehydrogenase -
  PK654_RS06995 (PK654_06995) cobT 1486990..1488018 (+) 1029 WP_271698827.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  PK654_RS07000 (PK654_07000) - 1488166..1489197 (+) 1032 WP_271698487.1 succinylglutamate desuccinylase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54972.27 Da        Isoelectric Point: 5.0235

>NTDB_id=776857 PK654_RS06980 WP_271698483.1 1483272..1484696(-) (sbcB) [Vibrio sp. SCSIO 43137]
MQNEQQPTFFWFDYETWGVNPATDRPSQFAGVRTDKDFNIIGEPLVIYCQPPSDYLPSPEAALITRITPQRTVQKGLPEP
EFIRRIHQELSVPNTTSLGYNSIRFDDEVTRHTLYRNFIDPYAWSWKNGNSRWDLLDVMRTCYALRPDGINWPTDDEGRP
SFKLEKLSVANGIEHENAHDAMADVIATIELAKKLKAAQPKLFDYLYSMRNKRKLNELIDIVNMTPLVHVSGMLGLECSN
TSWMVPLAWHPDNQNAAIMVNLAMDPEPLFQLNSEQLRERLYTRRDELAPDELPVPVKLVHINKCPILAPAKTLTAENAE
RIGIDREQCLKNLNRLKQHPEIREKLIEMYSVEREYPQDSDVDSQLYNNFFSPADRASMDIILETKPENLAALDISFNDS
RIEPLLFRYRARNFPHTLSESEQARWAAHCRDYFESRLPDYMLNLENLAHEHESDADKMAILKSVYQYVEKLVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=776857 PK654_RS06980 WP_271698483.1 1483272..1484696(-) (sbcB) [Vibrio sp. SCSIO 43137]
ATGCAAAACGAACAGCAACCGACCTTTTTCTGGTTTGATTATGAAACATGGGGAGTGAACCCGGCAACGGACAGACCTTC
TCAGTTTGCGGGTGTTCGTACCGATAAGGATTTCAATATTATCGGTGAACCGCTGGTGATTTACTGTCAGCCTCCGTCAG
ATTATCTTCCTTCTCCTGAAGCCGCGCTTATTACCCGGATTACTCCGCAACGAACGGTACAGAAGGGTTTGCCTGAGCCT
GAGTTTATCCGCCGGATTCATCAGGAGTTATCGGTGCCAAACACAACGTCACTCGGCTACAACAGTATCCGCTTTGATGA
TGAAGTTACCCGCCATACCCTGTACAGAAACTTTATTGACCCCTATGCGTGGAGCTGGAAAAACGGCAATTCCCGCTGGG
ATCTTCTGGATGTGATGCGCACCTGTTACGCACTACGCCCCGACGGTATTAACTGGCCGACCGATGACGAAGGAAGACCA
AGCTTTAAGCTGGAAAAACTGTCTGTCGCTAACGGTATTGAACATGAAAATGCCCACGATGCCATGGCAGACGTTATCGC
AACCATTGAGTTAGCAAAGAAATTGAAAGCCGCCCAGCCTAAGCTGTTTGATTACCTCTACAGCATGCGAAACAAGCGTA
AACTGAATGAGCTTATCGATATCGTTAATATGACTCCTCTGGTGCATGTATCAGGTATGTTAGGGCTGGAGTGTTCTAAT
ACCAGTTGGATGGTTCCGTTGGCCTGGCATCCGGACAATCAGAATGCCGCCATTATGGTCAATCTGGCCATGGATCCTGA
ACCACTTTTCCAGCTTAACAGCGAGCAGCTAAGGGAACGTCTCTATACCCGACGCGACGAGTTAGCCCCCGATGAACTGC
CGGTACCGGTGAAACTGGTTCATATAAACAAGTGCCCGATACTGGCTCCGGCAAAAACCCTGACGGCAGAAAATGCAGAA
CGAATCGGCATCGATCGTGAACAGTGTCTGAAAAACCTCAACAGACTTAAACAGCACCCTGAAATCCGGGAAAAGCTTAT
AGAAATGTATAGTGTTGAGCGCGAATACCCACAGGATAGTGATGTGGATAGCCAGCTTTACAACAACTTTTTCTCACCTG
CTGACCGCGCCTCAATGGATATTATTCTGGAGACTAAGCCGGAAAATCTGGCTGCACTGGATATCAGTTTCAATGACAGC
CGTATTGAACCGCTGCTGTTCCGCTACCGGGCGAGAAATTTCCCCCATACCTTAAGTGAGTCAGAACAAGCGCGCTGGGC
TGCACACTGTCGTGACTATTTTGAGTCGAGACTGCCGGACTATATGCTCAATCTGGAAAATCTTGCCCATGAGCATGAGA
GTGATGCAGACAAAATGGCCATTCTTAAGTCTGTTTACCAATATGTGGAGAAACTTGTTTCCTGA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

75.738

100

0.757