Detailed information NTG0776848

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PK654_RS02535
• Genome accession: NZ_CP116383
• Coordinates: 503485..504459 (+)
• Length: 324 a.a.
• NCBI ID: WP_271697506.1
• Uniprot ID: -
• Organism: Vibrio sp. SCSIO 43137
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 498485..509459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PK654_RS02500 (PK654_02500)	ftsB	498518..498799 (+)	282	WP_271697499.1	cell division protein FtsB	-
PK654_RS02505 (PK654_02505)	ispD	498830..499546 (+)	717	WP_271697500.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
PK654_RS02510 (PK654_02510)	ispF	499543..500019 (+)	477	WP_271697501.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PK654_RS02515 (PK654_02515)	truD	500023..501069 (+)	1047	WP_271697502.1	tRNA pseudouridine(13) synthase TruD	-
PK654_RS02520 (PK654_02520)	surE	501100..501849 (+)	750	WP_271697503.1	5'/3'-nucleotidase SurE	-
PK654_RS02525 (PK654_02525)	-	501846..502472 (+)	627	WP_271697504.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PK654_RS02530 (PK654_02530)	nlpD	502474..503418 (+)	945	WP_271697505.1	murein hydrolase activator NlpD	-
PK654_RS02535 (PK654_02535)	rpoS	503485..504459 (+)	975	WP_271697506.1	RNA polymerase sigma factor RpoS	Regulator
PK654_RS02540 (PK654_02540)	mutS	504525..507086 (-)	2562	WP_271697507.1	DNA mismatch repair protein MutS	-
PK654_RS02545 (PK654_02545)	pncC	507181..507669 (+)	489	WP_271697508.1	nicotinamide-nucleotide amidase	-
PK654_RS02550 (PK654_02550)	-	507724..508344 (-)	621	WP_271697509.1	TRIC cation channel family protein	-
PK654_RS02555 (PK654_02555)	btuF	508420..509241 (-)	822	WP_271697510.1	vitamin B12 ABC transporter substrate-binding protein BtuF	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37132.12 Da
• Isoelectric Point: 4.6799

>NTDB_id=776848 PK654_RS02535 WP_271697506.1 503485..504459(+) (rpoS) [Vibrio sp. SCSIO 43137]
MSISNAATKVEEFEIEEVVTTFDNSQGSQSTQETTKEDFEVTAKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAEKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDTNHSDPEVS
TQDDDIKLSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNMESLFD
IEQM

Nucleotide

• Length: 975 bp

>NTDB_id=776848 PK654_RS02535 WP_271697506.1 503485..504459(+) (rpoS) [Vibrio sp. SCSIO 43137]
ATGAGTATCAGCAATGCAGCAACGAAAGTCGAAGAGTTTGAAATTGAAGAAGTAGTCACTACATTTGACAATTCTCAAGG
AAGCCAATCTACACAAGAAACTACAAAAGAAGATTTTGAAGTTACAGCGAAGAGCCTGGACGCCACACAGCTGTACCTTG
GTGAAATCGGTTTCTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCCCGTCGCGCCCTGCGTGGTGATGAAGCG
GCACGTAAAAGAATGATAGAAAGTAACCTCAGATTAGTAGTAAAAATCTCACGCCGTTACAGCAATCGTGGTCTGGCACT
GTTGGATCTGATTGAAGAGGGTAACCTTGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCGGAGAGAGGATTCCGTTTTT
CCACCTACGCGACATGGTGGATCCGTCAGACCATTGAACGTGCGCTGATGAATCAGACACGTACTATTCGTCTGCCAATC
CATGTGGTGAAAGAGCTTAATATCTATCTGCGTACTGCCAGAGAGCTTTCTCAGAAGCTGGATCATGAACCGACCGCGGA
AGAGATCGCAGAGAAGCTGGATAAGCCGGTAAGTGATGTCAGCAAAATGCTGCGCCTGAACGAGCGGGTAAGCTCAGTAG
ACACGCCAATTGGCGGCGATGGTGAAAAAGCACTGCTGGATATTATTCCTGACACCAACCATTCTGATCCTGAAGTATCT
ACTCAGGATGATGATATCAAGCTCTCTTTGATTGACTGGCTTGACGAGCTGAACCCTAAACAGAAAGAGGTGCTGGCAAG
ACGTTTTGGTCTGCTGGGTTATGAGCCTTCTACGCTGGAAGAGGTTGGCCGTGAAATTAGTCTGACCCGTGAAAGAGTAC
GTCAGATTCAGGTTGAAGGCCTGCGCCGCCTGAGAGAGATCCTGCTTAAGCAGGGGCTGAATATGGAATCCCTGTTTGAT
ATCGAGCAGATGTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.024	100	0.83