Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   QWH96_RS05520 Genome accession   NZ_CP128987
Coordinates   1074433..1075503 (+) Length   356 a.a.
NCBI ID   WP_338433746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1069433..1080503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS05500 (QWH96_05500) - 1070255..1070903 (+) 649 Protein_1046 response regulator transcription factor -
  QWH96_RS05505 (QWH96_05505) - 1070887..1071957 (+) 1071 WP_003058333.1 HAMP domain-containing sensor histidine kinase -
  QWH96_RS05510 (QWH96_05510) - 1072082..1072504 (+) 423 WP_003058336.1 cupin domain-containing protein -
  QWH96_RS05515 (QWH96_05515) - 1072577..1073794 (-) 1218 WP_150336323.1 peptidoglycan bridge formation glycyltransferase FemA/FemB family protein -
  QWH96_RS05520 (QWH96_05520) xerS 1074433..1075503 (+) 1071 WP_338433746.1 tyrosine recombinase XerS Machinery gene
  QWH96_RS05525 (QWH96_05525) - 1075580..1076020 (+) 441 WP_003061679.1 NusG domain II-containing protein -
  QWH96_RS05530 (QWH96_05530) - 1076091..1077041 (-) 951 WP_012766934.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QWH96_RS05535 (QWH96_05535) - 1077031..1078083 (-) 1053 WP_065359377.1 FAD:protein FMN transferase -
  QWH96_RS05540 (QWH96_05540) - 1078154..1078660 (-) 507 WP_065359378.1 FMN-binding protein -
  QWH96_RS05545 (QWH96_05545) - 1078751..1079749 (-) 999 WP_022554625.1 polyprenyl synthetase family protein -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41373.61 Da        Isoelectric Point: 9.5680

>NTDB_id=776844 QWH96_RS05520 WP_338433746.1 1074433..1075503(+) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MRRDLLLEKIETYKAIMPWYVLEYYQSKLAVPYSFTTLYEYLKEYKRFFDWLMDADLTDATVIADIDLATLEHLTKKDLE
AFVLYLRERPSLNTYSTKEGLSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLASRAENIKQK
LFLGDETMGFLEYVDKDHELKLSNRAKSSFRKNKERDLAIIALLLASGIRLSEAVNLDLKDVNLNMMVIEVIRKGGKRDS
VNVAGFAKPYLEAYLAIRKNRYKAEKQDLAFFLTEYRGVPNRMDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDKL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=776844 QWH96_RS05520 WP_338433746.1 1074433..1075503(+) (xerS) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGAGACGTGATTTATTACTCGAAAAAATAGAAACTTATAAAGCTATCATGCCTTGGTATGTGTTAGAATACTATCAGTC
AAAATTGGCTGTCCCATACAGTTTTACAACGCTATATGAGTATTTAAAAGAATACAAACGTTTTTTTGACTGGTTAATGG
ATGCTGACTTAACGGATGCGACTGTCATTGCTGATATCGATTTAGCGACTCTTGAACACTTGACTAAGAAAGATTTAGAG
GCCTTTGTTCTGTACCTAAGAGAACGCCCTTCTCTTAATACTTATTCCACCAAAGAGGGTCTTTCTCAAACAACGATTAA
TCGCACTTTGTCTGCTTTATCAAGCCTTTATAAATATTTGACTGAAGAGGTTGAAAATGATCAGGGAGAGCCTTATTTCT
ATCGGAATGTCATGAAGAAGGTGTCCACGAAGAAGAAAAAAGAAACCCTAGCTTCTAGAGCTGAAAACATTAAACAAAAG
CTTTTTTTAGGGGATGAAACCATGGGTTTTCTAGAGTATGTAGATAAGGACCATGAACTCAAATTATCCAATCGTGCCAA
ATCTTCTTTCCGTAAAAATAAAGAGAGAGATCTAGCTATTATTGCCCTACTACTGGCCTCAGGCATTCGTCTATCAGAAG
CCGTTAATCTTGATTTAAAAGATGTTAACCTTAATATGATGGTTATTGAGGTTATCCGCAAAGGGGGAAAACGAGATTCA
GTGAATGTTGCAGGTTTTGCTAAACCTTATTTAGAAGCTTATCTGGCTATTCGCAAGAATCGTTATAAGGCTGAAAAACA
AGACCTTGCCTTCTTTTTAACGGAATATCGAGGAGTCCCTAATCGCATGGACGCCTCCAGTATTGAAAAAATGGTTGGTA
AATACTCTCAAGATTTTAAAATTCGTGTGACTCCCCATAAGTTACGACACACATTAGCCACACGTCTTTATGATGCGACC
AAGTCCCAGGTTTTGGTCAGTCATCAATTGGGGCATGCATCGACTCAAGTTACCGATTTGTATACCCATATTGTTAACGA
TGAACAAAAAAACGCCTTAGACAAATTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

80.618

100

0.806